Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0315 Papaver somniferum HOM05D031015 ORTHO05D002188 0.0e+00 1437.6 1046 100.0
PSO384G3006 Papaver somniferum HOM05D031015 ORTHO05D002188 0.0e+00 1208.7 1046 84.8
PSO170G1523 Papaver somniferum HOM05D031015 ORTHO05D002188 1.0e-300 1036.9 1017 73.0
PSO170G1432 Papaver somniferum HOM05D031015 ORTHO05D002188 1.8e-159 567.8 488 82.6
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 4.5e-30 137.9 1134 29.0
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 4.7e-27 127.9 285 37.5
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.9e-20 105.9 355 29.9
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.2e-20 105.1 355 29.6
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 3.2e-20 105.1 297 28.6
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.5e-20 104.4 305 30.8
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 4.7e-19 101.3 308 33.4
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.4e-18 99.8 256 41.8
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 4.4e-17 94.7 295 36.9
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.7e-17 94.4 1108 21.3
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 6.3e-16 90.9 356 28.1
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 6.3e-16 90.9 296 36.5
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 1.1e-15 90.1 1040 21.2
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.8e-15 89.4 225 31.6
MBI07_g09921_MAGBIO Magnolia biondii HOM05D002129 ORTHO05D002188 2.4e-15 89.0 291 27.8
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 3.1e-15 88.6 1065 30.3
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.1e-15 88.2 1109 21.8
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 7.0e-15 87.4 288 31.9
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 7.0e-15 87.4 673 23.5
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.2e-14 86.7 285 36.1
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.6e-14 86.3 310 29.7
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 1.0e-13 83.6 304 33.9
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 8.5e-13 80.5 96 49.0
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 8.5e-13 80.5 198 32.8
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 1.1e-12 80.1 294 34.4
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.1e-12 80.1 198 32.3
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.1e-12 80.1 520 31.9
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 1.1e-12 80.1 305 30.2
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 1.9e-12 79.3 1287 32.8
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 1.9e-12 79.3 227 36.1
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.9e-12 79.3 260 33.8
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 2.5e-12 79.0 307 27.4
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 4.2e-12 78.2 253 34.0
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 4.2e-12 78.2 253 34.0
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.2e-12 78.2 293 31.4
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 5.5e-12 77.8 330 32.4
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 5.5e-12 77.8 299 24.7
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 5.5e-12 77.8 204 35.8
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 7.2e-12 77.4 204 38.7
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 9.4e-12 77.0 253 34.4
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 9.4e-12 77.0 1201 21.5
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 1.2e-11 76.6 1073 22.8
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 1.6e-11 76.3 285 30.9
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.6e-11 76.3 399 24.6
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 1.6e-11 76.3 293 26.6
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 1.6e-11 76.3 271 28.4
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.1e-11 75.9 334 31.1
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.1e-11 75.9 228 36.0
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 2.7e-11 75.5 364 26.4
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 2.7e-11 75.5 87 46.0
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.7e-11 75.5 300 25.0
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 2.7e-11 75.5 1177 24.6
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 2.7e-11 75.5 193 35.8
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.7e-11 75.5 580 22.4
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.6e-11 75.1 257 28.8
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 4.7e-11 74.7 213 39.0
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.7e-11 74.7 321 28.3
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.1e-11 74.3 311 34.1
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.1e-11 74.3 1145 26.8
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.1e-11 74.3 349 30.1
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 6.1e-11 74.3 192 31.8
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 8.0e-11 73.9 307 27.7
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 8.0e-11 73.9 308 26.6
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.4e-10 73.2 232 31.5
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 3.0e-10 72.0 520 35.8
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 4.0e-10 71.6 270 29.3
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 5.2e-10 71.2 475 27.2
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.2e-10 71.2 328 28.0
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 5.2e-10 71.2 524 32.3
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.2e-10 71.2 218 28.0
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.8e-10 70.5 326 29.1
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 8.8e-10 70.5 218 29.4
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 1.2e-09 70.1 246 32.9
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 1.2e-09 70.1 352 26.1
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 1.2e-09 70.1 300 25.7
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 1.5e-09 69.7 239 34.7
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 1.5e-09 69.7 228 33.3
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 1.5e-09 69.7 228 33.3
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 1.5e-09 69.7 228 33.3
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.5e-09 69.7 326 28.5
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.5e-09 69.7 710 22.5
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.5e-09 69.7 1035 21.7
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.5e-09 69.7 251 27.5
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.5e-09 69.7 263 32.7
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 2.0e-09 69.3 253 32.4
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 2.6e-09 68.9 204 38.7
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 2.6e-09 68.9 276 30.1
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.3e-09 68.6 518 31.1
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.3e-09 68.6 280 28.6
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 4.4e-09 68.2 199 30.2
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.4e-09 68.2 180 38.3
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.4e-09 68.2 1037 20.6
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 4.4e-09 68.2 318 30.2
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 5.7e-09 67.8 260 25.4
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 7.5e-09 67.4 215 35.3
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 7.5e-09 67.4 207 32.9
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 9.7e-09 67.0 272 32.7
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.2e-08 65.9 312 32.1
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 2.2e-08 65.9 704 25.0
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 2.2e-08 65.9 328 25.6
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 2.2e-08 65.9 310 28.7
TAR374G0015 Trochodendron aralioides HOM05D002129 ORTHO05D002188 2.2e-08 65.9 161 33.5
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 2.8e-08 65.5 583 28.6
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 2.8e-08 65.5 257 29.2
Ah.07g197190 Amaranthus hybridus HOM05D002129 ORTHO05D002188 4.8e-08 64.7 297 26.3
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 4.8e-08 64.7 240 32.1
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 4.8e-08 64.7 289 30.1
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 4.8e-08 64.7 172 30.2
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.3e-08 64.3 288 28.5
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 8.2e-08 63.9 288 24.7
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 8.2e-08 63.9 310 28.4
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 8.2e-08 63.9 211 32.7
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 8.2e-08 63.9 349 26.6
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 1.1e-07 63.5 1098 25.0
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.4e-07 63.2 93 35.5
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 1.4e-07 63.2 213 31.9
unitig_62.g23616 Utricularia gibba HOM05D002129 ORTHO05D002188 1.4e-07 63.2 306 25.2
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.4e-07 63.2 237 28.7
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.8e-07 62.8 233 27.0
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.8e-07 62.8 233 27.0
HanXRQChr02g0048241 Helianthus annuus HOM05D002129 ORTHO05D002188 1.8e-07 62.8 183 33.9
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 1.8e-07 62.8 200 36.0
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.4e-07 62.4 303 24.4
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.4e-07 62.4 259 31.7
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 2.4e-07 62.4 509 23.2
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 2.4e-07 62.4 602 21.9
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 3.1e-07 62.0 578 21.5
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 3.1e-07 62.0 297 24.2
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 5.3e-07 61.2 380 23.9
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 5.3e-07 61.2 513 30.8
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 7.0e-07 60.8 240 32.1
CAN.G825.42 Capsicum annuum HOM05D002129 ORTHO05D002188 7.0e-07 60.8 231 25.5
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 7.0e-07 60.8 462 25.3
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 7.0e-07 60.8 278 27.7
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 7.0e-07 60.8 205 37.1
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 9.1e-07 60.5 629 23.1
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 9.1e-07 60.5 1219 28.8
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 9.1e-07 60.5 339 24.2
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.2e-06 60.1 290 27.2
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.6e-06 59.7 214 29.9
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 1.6e-06 59.7 214 29.4
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 2.0e-06 59.3 216 33.8
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 3.5e-06 58.5 220 25.0
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 3.5e-06 58.5 1179 19.6
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 3.5e-06 58.5 273 23.4
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 4.5e-06 58.2 228 25.9
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 4.5e-06 58.2 558 24.6
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 4.5e-06 58.2 318 25.5
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 4.5e-06 58.2 648 20.5
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.5e-06 58.2 269 23.8
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 5.9e-06 57.8 300 27.3
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 5.9e-06 57.8 584 21.2
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 7.7e-06 57.4 184 40.2
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 7.7e-06 57.4 215 24.7


User provided reference genes

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