Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 9.5e-83 310.1 151 100.0
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 9.5e-83 310.1 151 100.0
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.3e-79 299.7 151 96.7
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.3e-79 299.7 151 96.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 96.0
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 6.4e-79 297.4 152 96.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 6.4e-79 297.4 152 96.7
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.4e-79 297.0 151 95.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.1e-78 296.6 153 95.4
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.1e-78 296.6 150 96.0
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 150 96.0
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 150 96.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 152 96.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.1e-78 296.6 150 96.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.4e-78 296.2 151 94.7
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.4e-78 296.2 150 96.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 96.1
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 96.1
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.4e-78 296.2 150 95.3
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 95.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 96.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 95.9
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 96.6
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 2.4e-78 295.4 148 96.6
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 2.4e-78 295.4 148 96.6
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 95.4
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 4.1e-78 294.7 148 95.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 4.1e-78 294.7 152 94.7
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 4.1e-78 294.7 152 94.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 5.4e-78 294.3 150 94.0
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 5.4e-78 294.3 151 93.4
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.4e-78 294.3 148 95.9
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 5.4e-78 294.3 148 95.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 150 94.7
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 150 94.7
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 95.9
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 95.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 147 95.9
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 9.2e-78 293.5 156 92.3
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.2e-78 293.5 148 94.6
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 9.2e-78 293.5 147 95.9
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 9.2e-78 293.5 147 95.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 9.2e-78 293.5 147 95.2
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.2e-77 293.1 157 91.7
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 95.3
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.2e-77 293.1 151 95.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 150 93.3
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 150 93.3
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 94.6
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.1e-77 292.4 151 94.7
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.7e-77 292.0 150 94.7
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.7e-77 292.0 148 93.2
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 93.2
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 93.2
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 3.5e-77 291.6 151 93.4
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 3.5e-77 291.6 151 93.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 94.6
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.6e-77 291.2 148 93.9
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 4.6e-77 291.2 157 91.1
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 4.6e-77 291.2 147 96.6
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 6.0e-77 290.8 150 94.0
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 6.0e-77 290.8 151 94.0
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 6.0e-77 290.8 148 93.9
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 7.8e-77 290.4 148 94.6
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 94.7
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 94.6
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 94.7
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.0e-76 290.0 148 94.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.3e-76 289.7 144 96.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.3e-76 288.9 148 93.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.3e-76 288.9 148 95.3
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 92.8
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 94.7
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 93.9
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 92.6
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 5.1e-76 287.7 150 92.7
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 91.4
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 5.1e-76 287.7 144 95.8
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 6.6e-76 287.3 152 93.4
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 6.6e-76 287.3 148 93.9
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 6.6e-76 287.3 148 93.9
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 6.6e-76 287.3 148 93.2
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.6e-76 287.0 148 91.9
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 148 92.6
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.9e-75 285.8 148 93.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.9e-75 285.8 148 93.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.9e-75 285.8 148 93.2
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 151 90.1
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.3e-75 285.0 148 92.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.3e-75 285.0 148 92.6
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 4.3e-75 284.6 151 90.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 93.2
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 93.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 4.3e-75 284.6 151 91.4
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 9.6e-75 283.5 150 90.7
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 3.6e-74 281.6 149 91.3
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 6.2e-74 280.8 148 91.2
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.4e-73 279.6 152 90.1
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.8e-73 279.3 143 93.0
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.8e-73 279.3 149 89.3
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 91.2
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 91.2
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 6.9e-73 277.3 156 88.5
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 9.9e-72 273.5 144 90.3
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.2e-71 272.3 143 90.9
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.4e-70 269.6 148 89.9
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 3.2e-70 268.5 138 92.8
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 9.3e-70 266.9 140 91.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.1e-69 265.8 143 89.5
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 8.7e-68 260.4 131 95.4
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 8.7e-68 260.4 153 83.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 8.7e-68 260.4 153 83.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.9e-67 259.2 131 94.7
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.3e-67 258.1 130 93.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 7.3e-67 257.3 127 96.9
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 7.3e-67 257.3 127 96.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-66 256.1 129 94.6
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.6e-66 256.1 128 94.5
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.1e-66 255.8 132 93.9
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.6e-66 255.0 128 95.3
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.1e-65 253.4 142 87.3
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.4e-65 253.1 129 92.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.8e-65 252.7 127 94.5
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.8e-65 252.7 127 92.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.4e-65 252.3 145 86.2
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-65 251.9 130 93.8
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 3.1e-65 251.9 142 84.5
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.1e-65 251.9 127 93.7
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 4.0e-65 251.5 128 94.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.3e-65 251.1 129 92.2
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 5.3e-65 251.1 124 96.0
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 6.9e-65 250.8 128 92.2
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.5e-64 249.6 129 93.0
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 2.6e-64 248.8 128 92.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.3e-63 246.5 148 83.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 6.4e-63 244.2 140 85.0
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.9e-60 235.0 143 73.4
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.5e-59 233.0 144 72.9
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 9.6e-59 230.3 147 74.1
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 3.4e-56 221.9 153 73.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 8.4e-55 217.2 185 62.7
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 3.9e-52 208.4 116 86.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.3e-51 204.9 144 72.9
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.3e-50 203.4 126 77.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 4.8e-50 201.4 103 94.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.1e-49 200.3 103 95.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 92.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.1e-46 190.3 116 75.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.7e-44 181.0 87 97.7
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.9e-43 179.5 115 83.5
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.2e-39 166.0 82 93.9
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.6e-37 159.8 83 86.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.3e-36 156.8 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.7e-36 154.5 146 59.6
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.3e-33 144.8 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.1e-30 137.1 70 88.6
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.6e-29 131.7 71 93.0
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.9e-28 128.6 71 91.5
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.0e-27 126.3 71 90.1
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.4e-25 119.4 77 75.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 7.7e-16 87.8 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 8.5e-15 84.3 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.0e-12 75.9 70 57.1


User provided reference genes

Program Settings