Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 3.4e-121 438.3 224 100.0
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-115 419.9 224 96.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 3.6e-110 401.7 224 92.0
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.1e-87 327.0 224 74.1
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.0e-85 320.5 225 73.8
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 4.6e-81 305.1 221 71.9
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.9e-81 304.7 230 68.3
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 8.6e-80 300.8 224 68.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.0e-77 292.0 225 68.9
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 9.5e-71 270.8 201 68.7
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.2e-68 263.8 208 63.9
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 2.0e-68 263.1 225 62.2
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.4e-68 262.3 227 63.0
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 9.8e-68 260.8 201 63.2
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.9e-66 256.5 225 61.8
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 4.1e-66 255.4 223 62.8
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 5.4e-66 255.0 225 61.8
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 5.4e-66 255.0 225 61.8
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 7.1e-66 254.6 220 61.8
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 9.2e-66 254.2 220 61.4
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 9.2e-66 254.2 226 61.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.2e-65 253.8 220 60.9
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.1e-65 253.1 220 60.9
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.3e-64 250.4 220 60.5
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.9e-64 248.8 230 58.3
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 6.6e-64 248.1 225 58.2
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.5e-63 246.9 222 60.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.5e-63 246.9 218 60.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.9e-63 246.5 233 59.7
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 3.3e-63 245.7 244 56.1
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.8e-61 240.0 228 58.8
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.8e-61 240.0 221 60.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.2e-61 238.4 203 63.1
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 8.9e-61 237.7 223 58.7
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-59 233.0 215 57.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.2e-59 233.0 230 57.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 6.4e-59 231.5 215 56.7
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.4e-58 228.4 225 58.7
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 5.4e-58 228.4 232 55.6
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 6.0e-57 224.9 222 54.1
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.7e-56 223.4 189 61.9
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.7e-56 223.4 217 56.7
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 3.9e-56 222.2 226 55.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.1e-55 220.7 229 55.0
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.3e-55 219.2 221 55.7
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.3e-55 219.2 236 52.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.3e-55 219.2 190 60.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 5.6e-55 218.4 229 53.3
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 5.6e-55 218.4 223 55.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.6e-54 216.9 229 52.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.4e-53 213.8 228 54.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.8e-53 213.4 221 50.7
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.8e-53 213.4 219 54.3
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.0e-52 209.9 222 53.2
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.6e-52 209.5 227 53.3
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.6e-52 209.5 230 52.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 7.6e-52 208.0 224 51.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.9e-52 207.6 213 54.5
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.3e-51 207.2 227 52.0
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 1.3e-51 207.2 226 50.9
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.3e-51 207.2 219 51.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.3e-51 207.2 234 51.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.3e-51 207.2 226 49.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-51 206.8 212 54.2
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.2e-51 206.5 227 52.0
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.2e-51 206.5 212 54.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.9e-51 206.1 226 50.9
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.8e-51 205.7 217 53.9
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 8.4e-51 204.5 226 50.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 8.4e-51 204.5 226 50.4
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.4e-51 204.5 203 54.2
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 8.4e-51 204.5 187 57.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.1e-50 204.1 224 54.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.4e-50 203.8 213 52.6
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.9e-50 203.4 272 46.3
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.4e-50 203.0 227 51.1
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.4e-50 203.0 234 50.9
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.4e-50 203.0 233 50.6
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 2.4e-50 203.0 227 52.9
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.2e-50 202.6 209 51.7
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 4.2e-50 202.2 210 53.8
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.4e-50 201.8 232 50.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.2e-49 200.7 227 51.5
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.2e-49 200.7 215 50.2
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.1e-49 199.9 227 50.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.7e-49 199.5 233 49.8
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.7e-48 196.8 233 48.9
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.3e-48 196.4 194 56.2
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.9e-48 195.7 243 47.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.1e-48 195.3 190 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.3e-47 192.6 209 47.4
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.3e-47 191.4 244 47.5
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.8e-46 189.5 200 55.5
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 3.6e-46 189.1 215 50.2
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.8e-46 188.7 225 47.1
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.1e-46 188.0 214 52.3
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.4e-45 187.2 296 41.6
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 2.4e-45 186.4 181 56.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 5.8e-44 181.8 213 48.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 5.8e-44 181.8 227 46.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.9e-44 181.0 209 49.8
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 8.4e-43 177.9 166 59.6
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.4e-42 176.4 166 59.6
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.6e-41 173.7 118 68.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.9e-40 169.1 268 43.7
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.1e-39 167.5 198 50.0
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.5e-39 167.2 357 35.3
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.9e-39 166.8 201 43.8
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 4.3e-39 165.6 250 41.6
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.4e-37 159.8 188 47.3
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-36 156.8 245 43.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 3.4e-36 156.0 161 56.5
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 4.5e-36 155.6 131 61.8
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 3.2e-34 149.4 152 55.9
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 7.1e-34 148.3 159 54.1
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.4e-29 134.0 131 60.3
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.8e-29 133.7 164 51.8
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 9.0e-29 131.3 171 48.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.2e-28 131.0 122 58.2
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.9e-27 125.6 143 51.7
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.2e-25 120.9 216 35.6
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.5e-25 119.4 162 46.9
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 6.7e-24 115.2 217 38.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.1e-21 107.8 213 36.2
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.0e-21 104.8 114 51.8
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.7e-19 100.5 204 30.9
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.2e-18 95.9 91 59.3
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.7e-17 93.2 155 40.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.7e-16 88.6 104 48.1
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-15 87.8 100 50.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 5.7e-15 85.5 99 48.5
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 9.7e-15 84.7 226 27.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.3e-14 84.3 58 75.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.7e-14 82.8 172 37.8
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 6.9e-13 78.6 84 56.0
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.9e-11 73.2 200 30.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.1e-10 71.2 88 45.5
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.1e-10 71.2 88 45.5
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.4e-10 70.9 45 73.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 8.8e-08 61.6 53 60.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.5e-07 60.8 83 42.2
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 8.2e-06 55.1 64 50.0


User provided reference genes

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