Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 4760.3 2403 100.0
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2837.8 2449 59.7
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2702.9 2443 57.1
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2675.2 2435 56.4
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2634.0 2450 56.8
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2621.3 2502 56.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2516.5 2454 54.0
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2484.1 2474 53.7
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2478.7 2455 53.6
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2474.9 2423 54.4
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2457.6 2456 53.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2446.8 2456 52.9
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2445.6 2462 53.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2444 53.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2431.4 2452 53.1
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2431.0 2478 53.3
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2414.0 2440 52.6
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2412.1 2447 52.5
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2395.9 2388 54.1
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2394.4 2451 52.5
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2394.0 2447 52.5
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2392.5 2449 52.5
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2392.1 2449 51.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2387.8 2441 52.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2382.8 2483 51.3
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2381.7 2483 51.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2380.5 2483 51.2
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2374.7 2450 51.5
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2369.7 2450 51.4
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2365.9 2437 51.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2363.2 2483 50.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2362.4 2427 52.9
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2361.6 2460 51.2
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2361.6 2435 51.8
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2359.3 2424 51.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2350.1 2435 51.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2346.2 2438 51.1
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2335.8 2453 51.4
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2325.4 2435 50.9
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2320.8 2440 51.4
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2319.3 2426 50.9
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2316.6 2438 51.1
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2314.7 2433 51.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2302.7 2478 50.2
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2287.3 2443 50.9
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2280.8 2448 49.9
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2268.4 2445 50.4
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2266.5 2388 50.5
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2263.8 2406 50.7
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2255.7 2450 51.1
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2248.0 2441 50.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2244.2 2428 50.0
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2239.2 2453 49.5
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2238.0 2452 49.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2233.4 2415 49.5
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2226.1 2452 49.6
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2225.3 2479 48.9
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2221.4 2417 48.3
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2221.0 2421 49.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2220.3 2285 51.7
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2216.8 2458 49.5
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2214.5 2119 55.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2208.3 2415 49.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2204.5 2420 49.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2202.9 2421 49.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2190.6 2461 48.6
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2187.9 2450 48.8
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2180.6 2444 49.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2174.8 2446 48.1
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2169.4 2451 48.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2169.4 2425 48.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2168.7 2427 48.3
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2166.3 2431 48.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2164.4 2429 48.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2156.7 2426 47.8
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2147.1 2426 48.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2146.3 2456 48.3
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2144.4 2428 48.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2137.1 2424 48.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2122.1 2412 48.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2120.1 2449 47.6
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2108.2 2389 48.3
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2068.5 2434 46.4
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2056.2 2412 47.5
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2039.6 2451 46.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2039.2 2084 52.1
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2036.5 2084 52.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1987.2 2440 46.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1973.7 2255 47.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1973.0 2435 45.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1906.3 2503 43.8
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1837.8 1838 53.3
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1610.1 1465 57.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1604.3 2454 40.1
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1597.4 1465 56.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1485.3 1528 52.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1469.9 1647 48.8
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1318.1 1400 50.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1312.4 1470 49.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1298.1 1103 60.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1295.8 1557 45.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1216.8 1395 48.0
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1150.6 1153 53.7
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1147.1 1430 45.6
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1088.2 1041 55.2
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.8e-284 984.2 1024 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 6.2e-277 959.1 2518 29.5
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-273 946.8 1016 50.6
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 8.2e-237 825.9 2059 30.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.7e-234 818.1 2107 30.0
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.8e-228 798.1 1502 35.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 3.5e-227 793.9 903 47.6
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 6.5e-226 789.6 1406 36.5
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 7.7e-219 766.1 939 46.3
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 3.6e-200 704.1 769 47.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.1e-196 692.6 2312 26.3
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.5e-174 619.0 784 42.7
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.4e-156 559.3 790 40.0
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.9e-149 534.3 580 47.9
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 8.3e-104 384.0 263 69.6
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.4e-103 383.3 312 60.6
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.3e-100 372.1 462 46.1
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.6e-99 369.8 473 44.6
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.8e-96 359.0 480 44.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.8e-83 315.8 336 51.2
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.5e-76 292.7 474 38.6
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 8.9e-74 284.3 430 40.5
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-69 269.6 382 40.1
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.8e-66 260.0 331 41.7
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 6.8e-66 258.1 318 46.2
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 4.2e-63 248.8 442 35.5
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 7.8e-62 244.6 215 59.1
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.4e-55 223.8 150 72.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 5.3e-50 205.3 277 43.0
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.9e-48 199.5 347 37.8
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.9e-46 191.4 187 52.9
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 8.7e-45 188.0 122 74.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.0e-41 176.8 123 69.1
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.5e-41 175.6 269 41.3
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.6e-38 167.2 1121 22.0
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 3.3e-36 159.5 122 65.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 4.3e-36 159.1 151 55.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 2.0e-33 150.2 110 66.4
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.6e-30 139.0 98 71.4
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 3.0e-29 136.3 219 36.5
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.7e-24 120.6 194 39.2
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.9e-24 119.8 308 29.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 5.7e-20 105.5 83 61.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 5.7e-20 105.5 140 40.7
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 9.1e-18 98.2 132 42.4
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.8e-16 92.8 107 48.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 3.8e-16 92.8 139 37.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.5e-15 90.1 114 41.2
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 5.5e-15 89.0 184 33.2
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.6e-14 87.4 76 52.6
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.1e-14 87.0 76 52.6
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 2.6e-12 80.1 133 34.6
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.3e-11 75.5 110 37.3
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 4.5e-09 69.3 72 47.2
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 5.0e-08 65.9 107 36.4
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 9.4e-07 61.6 102 35.3
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 6.1e-06 58.9 107 33.6


User provided reference genes

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