Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 7.3e-266 920.2 544 100.0
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.5e-242 840.1 562 90.0
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 5.0e-142 508.8 541 61.4
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 3.4e-138 496.1 540 60.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.9e-136 490.3 543 60.2
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.5e-135 486.1 549 58.7
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 4.6e-135 485.7 556 59.0
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.2e-128 463.0 553 56.1
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 4.1e-128 462.6 549 57.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-127 460.7 532 57.9
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 5.1e-126 455.7 535 57.2
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 6.2e-124 448.7 525 61.1
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-123 448.0 537 60.0
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 5.2e-123 445.7 528 58.3
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.8e-123 445.3 547 58.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.5e-122 444.1 553 49.7
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.7e-121 440.7 544 57.4
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.9e-121 439.9 523 57.0
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.9e-121 439.9 587 53.5
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 4.2e-120 436.0 528 55.7
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.7e-119 433.3 552 56.5
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 4.6e-119 432.6 527 54.1
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.3e-118 431.0 552 55.8
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.3e-118 430.3 525 55.8
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.3e-118 430.3 535 56.4
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 9.6e-117 424.9 533 55.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.1e-116 423.7 568 54.0
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 8.1e-116 421.8 544 55.1
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.1e-115 421.4 541 51.9
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.8e-115 420.6 530 50.8
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 2.4e-115 420.2 543 53.8
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.3e-115 419.1 550 50.9
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 6.9e-115 418.7 551 55.0
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 6.9e-115 418.7 574 51.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.4e-114 416.0 539 57.1
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 9.9e-114 414.8 540 54.1
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.8e-113 412.9 525 51.4
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 6.4e-113 412.1 533 53.7
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.1e-112 411.4 545 54.3
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.4e-112 410.2 563 51.5
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.4e-112 410.2 536 56.9
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 4.2e-112 409.5 567 48.5
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 5.4e-112 409.1 538 53.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.1e-111 407.1 564 51.4
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 2.1e-111 407.1 548 53.5
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.7e-111 406.8 535 54.6
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 3.5e-111 406.4 547 54.3
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 4.6e-111 406.0 545 55.4
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.6e-111 406.0 537 53.3
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 6.0e-111 405.6 545 54.1
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 6.6e-110 402.1 535 50.5
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.5e-109 401.0 539 53.6
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.5e-109 400.2 541 51.9
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 4.3e-109 399.4 581 50.4
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 5.6e-109 399.1 547 52.7
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 7.3e-109 398.7 547 55.4
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 2.1e-108 397.1 541 53.6
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 2.1e-108 397.1 544 55.0
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 3.6e-108 396.4 537 50.5
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.4e-107 393.7 542 51.1
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 9.0e-107 391.7 536 52.8
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.0e-106 390.6 606 49.8
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.0e-106 390.6 589 48.7
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 2.6e-106 390.2 536 51.5
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 3.4e-106 389.8 540 51.5
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 5.8e-106 389.0 549 52.1
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.8e-106 389.0 577 50.4
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 9.9e-106 388.3 535 52.3
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.3e-105 387.9 541 48.2
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.7e-105 387.5 535 52.0
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 8.4e-105 385.2 540 50.9
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.4e-104 384.4 570 49.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 7.1e-104 382.1 538 54.3
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 9.3e-104 381.7 540 48.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.6e-103 380.9 559 49.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.6e-103 380.9 544 49.4
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.7e-103 380.2 542 48.9
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 6.0e-103 379.0 536 49.6
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.0e-102 378.3 538 52.8
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.0e-102 378.3 558 51.4
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.0e-102 378.3 534 53.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.3e-102 377.9 546 50.0
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 2.3e-102 377.1 521 46.3
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.9e-101 374.0 554 49.1
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-100 371.3 558 48.6
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.6e-100 370.9 539 51.8
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 8.1e-100 368.6 598 50.7
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.1e-99 368.2 540 50.7
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.3e-99 365.9 546 49.3
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.0e-99 365.2 533 51.0
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.3e-97 361.3 529 51.2
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.8e-97 359.8 530 44.5
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 6.5e-97 359.0 576 47.6
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.4e-97 358.6 529 49.1
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.4e-96 357.8 512 44.5
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.4e-96 357.8 558 48.4
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.5e-96 357.1 533 48.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 2.7e-95 353.6 552 50.9
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 6.0e-95 352.4 529 50.9
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 6.0e-95 352.4 548 49.1
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.9e-95 352.1 533 50.1
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.3e-94 350.5 577 48.0
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 8.7e-94 348.6 543 47.9
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 3.4e-90 336.7 546 46.7
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 6.5e-89 332.4 483 49.1
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.2e-87 328.2 523 48.4
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 4.6e-87 326.2 545 46.8
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.9e-78 296.6 352 55.1
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.1e-77 295.0 583 46.1
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 2.0e-74 284.3 558 43.9
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-73 280.8 349 53.9
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.8e-70 271.2 519 41.0
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.3e-68 265.0 496 39.7
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.7e-68 263.5 492 39.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 5.0e-65 253.1 376 49.7
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.2e-64 250.4 563 38.4
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 6.1e-63 246.1 547 36.9
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.6e-58 230.7 526 35.4
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 2.0e-53 214.5 153 71.9
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.7e-47 194.1 239 46.4
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.5e-45 188.3 125 79.2
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.5e-45 188.3 207 53.1
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 5.7e-45 186.4 356 44.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 8.6e-41 172.6 245 44.5
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.6e-39 168.3 213 51.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.9e-36 156.8 407 32.7
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.0e-33 149.1 397 37.5
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 2.8e-31 141.0 188 44.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 2.8e-31 141.0 188 44.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 2.3e-30 137.9 238 36.1
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 3.1e-30 137.5 238 41.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.6e-29 134.4 97 71.1
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 1.9e-24 118.2 154 51.3
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.2e-23 113.2 153 48.4
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 5.2e-22 110.2 115 52.2
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.3e-16 89.7 62 69.4
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-14 85.1 61 67.2
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-12 79.0 85 52.9
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 2.2e-12 78.2 256 29.3
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.9e-12 77.8 62 66.1
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.2e-10 72.4 54 70.4
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.2e-10 72.4 67 58.2
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-10 71.2 99 42.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 2.7e-10 71.2 74 54.1
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.7e-09 68.6 68 57.4
PSO339G5521 Papaver somniferum HOM05D001083 ORTHO05D001637 1.6e-07 62.0 111 39.6
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 4.7e-07 60.5 54 66.7
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.1e-06 59.3 67 52.2
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.9e-06 56.2 37 70.3


User provided reference genes

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