Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 8.8e-108 394.0 265 100.0
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.1e-86 323.9 264 87.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 6.2e-53 211.8 127 85.0
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.1e-52 211.1 127 85.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 9.0e-52 208.0 127 83.5
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.0e-52 208.0 127 83.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.2e-51 207.6 125 85.6
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.5e-51 207.2 128 82.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.0e-51 206.8 127 83.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.4e-51 205.7 127 83.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 4.4e-51 205.7 131 80.9
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.6e-51 204.9 127 80.3
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.6e-51 204.9 127 80.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.6e-51 204.9 128 81.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.3e-50 204.1 127 81.9
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.7e-50 203.8 126 83.3
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.7e-50 203.8 127 80.3
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.7e-50 203.8 126 83.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.7e-50 203.8 128 80.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.2e-50 203.4 128 81.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.8e-50 202.6 127 81.9
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 4.9e-50 202.2 128 79.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.9e-50 202.2 128 79.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.4e-50 201.8 127 79.5
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 6.4e-50 201.8 127 82.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.4e-50 201.4 128 79.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.1e-49 201.1 127 79.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.4e-49 200.7 127 81.9
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.4e-49 200.7 126 81.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-49 200.3 127 78.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.4e-49 199.9 127 79.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.4e-49 199.9 127 79.5
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.2e-49 199.5 127 81.9
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.2e-49 199.5 127 78.7
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 5.4e-49 198.7 127 79.5
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.6e-48 197.2 125 78.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.1e-48 196.8 127 77.2
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.1e-48 196.8 127 77.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.7e-48 196.4 127 77.2
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.7e-48 196.4 127 77.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-48 196.1 127 78.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-48 196.1 127 78.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.5e-48 196.1 126 77.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.6e-48 195.7 127 80.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 7.8e-48 194.9 128 77.3
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 7.8e-48 194.9 127 75.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.0e-47 194.5 127 79.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-47 194.1 127 78.7
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-47 194.1 127 78.7
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.3e-47 194.1 128 76.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.3e-47 194.1 127 77.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.3e-47 194.1 127 76.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.7e-47 193.7 128 75.8
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.9e-47 192.6 128 77.3
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 3.9e-47 192.6 126 78.6
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 6.6e-47 191.8 128 78.1
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.7e-47 191.4 212 59.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 8.7e-47 191.4 127 76.4
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.1e-46 191.0 127 78.0
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.1e-46 191.0 195 61.0
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.9e-46 190.3 128 74.2
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.5e-46 189.9 122 78.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.5e-46 189.9 208 59.1
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.3e-46 189.5 127 74.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.3e-46 189.5 128 78.9
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 4.3e-46 189.1 128 75.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.3e-46 189.1 162 66.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 4.3e-46 189.1 128 74.2
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 4.3e-46 189.1 126 77.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 4.3e-46 189.1 127 74.8
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.6e-46 188.7 126 77.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 7.3e-46 188.3 127 74.8
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 7.3e-46 188.3 129 74.4
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 7.3e-46 188.3 126 76.2
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 9.6e-46 188.0 127 74.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.6e-46 188.0 128 74.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 9.6e-46 188.0 126 77.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.6e-45 187.2 127 74.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.1e-45 186.8 127 78.7
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.1e-45 186.8 127 78.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-45 186.0 127 74.0
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.6e-45 186.0 127 74.8
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.6e-45 186.0 127 74.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.6e-45 186.0 127 74.0
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 8.1e-45 184.9 126 73.8
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 8.1e-45 184.9 127 74.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.1e-45 184.9 210 56.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.1e-44 184.5 127 75.6
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.1e-44 184.5 126 72.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-44 184.1 127 72.4
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.4e-44 184.1 127 73.2
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.8e-44 183.7 119 78.2
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.4e-44 183.3 127 72.4
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.4e-44 183.3 127 72.4
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.0e-44 182.6 124 75.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.3e-44 182.2 125 76.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 5.3e-44 182.2 127 71.7
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 9.0e-44 181.4 124 73.4
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.2e-43 181.0 126 72.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.2e-43 181.0 126 73.0
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.0e-43 180.3 125 71.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.0e-43 180.3 125 71.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.6e-43 179.9 125 70.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.6e-43 179.9 126 73.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 5.8e-43 178.7 125 70.4
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.6e-43 178.3 111 82.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.9e-42 176.4 143 65.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.9e-42 176.4 126 69.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.1e-41 174.5 115 77.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 3.2e-41 172.9 119 77.3
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.1e-40 170.2 104 82.7
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.5e-40 169.5 108 78.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 6.0e-40 168.7 134 67.2
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.1e-37 160.2 125 68.0
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.8e-37 159.1 145 64.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.8e-36 157.1 126 65.9
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.8e-36 157.1 110 74.5
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 9.0e-36 154.8 129 65.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.0e-35 153.7 125 63.2
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 3.4e-35 152.9 125 60.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.8e-35 152.1 109 75.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 7.6e-35 151.8 95 76.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.9e-34 149.1 125 60.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 7.1e-33 145.2 130 63.1
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-32 144.4 99 74.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-32 144.1 129 61.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.5e-32 142.9 107 66.4
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 4.6e-32 142.5 101 75.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-31 140.6 128 60.9
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.7e-30 135.6 135 57.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 7.4e-30 135.2 111 64.9
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 7.4e-30 135.2 111 64.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 1.6e-29 134.0 126 58.7
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 4.8e-29 132.5 95 70.5
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-29 132.5 128 57.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.2e-29 132.1 84 82.1
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 8.2e-29 131.7 127 59.8
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.1e-28 129.8 85 77.6
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.0e-27 127.1 85 78.8
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.0e-26 124.8 84 76.2
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.3e-26 124.4 85 75.3
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-26 123.6 128 54.7
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.2e-25 119.8 103 56.3
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.8e-23 114.0 82 73.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.3e-23 113.6 84 67.9
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-20 104.4 79 69.6
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.4e-15 87.8 110 42.7
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.3e-15 87.0 74 60.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 2.8e-13 80.1 99 40.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.8e-13 80.1 52 73.1
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.8e-13 79.3 48 77.1
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-12 77.8 51 74.5
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 5.3e-12 75.9 67 59.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.0e-10 71.6 65 53.8
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 7.2e-09 65.5 94 42.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.0e-07 61.6 40 67.5
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 6.7e-07 58.9 37 70.3
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.1e-06 58.2 52 57.7


User provided reference genes

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