Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 0.0e+00 2376.7 1210 100.0
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1174.1 1275 53.0
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1142.5 1258 53.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.2e-308 1063.5 1267 51.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.4e-295 1018.5 1219 49.9
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.2e-283 979.5 1268 48.2
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 3.1e-277 959.1 1242 47.5
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 7.0e-277 958.0 1255 47.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 7.7e-268 927.9 1254 46.3
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.2e-262 909.8 1271 45.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 4.5e-260 902.1 1274 45.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 5.0e-259 898.7 1236 45.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 6.6e-259 898.3 1253 44.1
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 2.0e-255 886.7 1278 44.6
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.4e-253 879.8 1240 44.3
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 6.6e-251 871.7 1208 44.2
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 7.1e-245 851.7 1256 43.9
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 7.1e-245 851.7 1261 43.1
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 6.6e-243 845.1 1257 42.6
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 8.1e-241 838.2 1255 42.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 5.2e-240 835.5 1266 42.6
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 3.4e-239 832.8 1261 42.7
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 5.8e-239 832.0 1254 42.1
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 9.9e-239 831.2 1253 43.1
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 9.9e-239 831.2 1234 42.7
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 5.4e-237 825.5 1249 42.2
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 3.0e-235 819.7 1275 42.6
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 3.9e-235 819.3 1259 41.3
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.3e-234 815.1 1291 41.3
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 7.3e-234 815.1 1262 42.4
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.8e-233 813.1 1229 44.1
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.4e-232 810.8 1248 42.1
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 2.4e-232 810.1 1276 43.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.9e-230 803.1 1259 43.4
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.2e-228 797.7 1284 40.8
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 6.0e-228 795.4 1276 40.2
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.0e-228 795.4 1291 41.4
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.0e-227 794.7 1248 41.8
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.1e-226 791.2 1242 43.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 5.6e-226 788.9 1238 42.6
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 7.3e-226 788.5 1320 40.8
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 9.6e-226 788.1 1263 40.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.8e-224 783.9 1307 40.3
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.7e-222 777.3 1262 42.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 7.3e-218 761.9 1209 41.9
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.7e-214 750.7 1249 41.8
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.9e-214 749.2 1297 40.0
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.4e-213 745.7 1234 41.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.4e-213 745.7 1255 39.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 7.1e-213 745.3 1248 41.3
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.3e-211 740.3 1241 40.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.8e-209 733.4 1241 41.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.6e-207 725.3 1270 39.1
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 6.7e-203 712.2 1318 37.9
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.3e-202 709.5 1293 38.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.8e-200 704.1 1326 37.9
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 7.6e-199 698.7 1239 39.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 7.4e-194 682.2 1306 40.0
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.3e-193 681.4 1237 39.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 2.8e-193 680.2 1180 38.4
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 7.2e-189 665.6 849 48.6
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.3e-182 644.8 1237 38.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.2e-182 644.0 1185 38.1
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.3e-177 628.2 1192 38.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.1e-176 623.6 1189 38.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.9e-175 619.4 1204 37.9
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.3e-174 618.2 1219 36.3
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.3e-169 601.7 1225 36.7
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.7e-167 594.0 1231 34.8
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.2e-162 578.6 1196 37.0
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.0e-159 567.8 1248 35.3
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.8e-155 554.7 1243 35.3
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.2e-153 547.7 1238 34.7
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.6e-151 541.6 1212 34.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.5e-151 540.0 1237 34.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.7e-150 538.1 1236 34.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.6e-148 531.6 1240 34.7
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.8e-147 528.1 1148 34.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 4.0e-147 526.9 867 38.6
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 2.6e-146 524.2 1240 34.6
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.6e-146 524.2 1203 33.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 5.7e-146 523.1 1319 34.3
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 9.8e-146 522.3 1208 34.2
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.4e-144 517.7 1063 36.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.6e-132 478.4 773 41.1
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 8.1e-124 449.5 1145 32.1
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 4.6e-119 433.7 1200 32.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 6.2e-116 423.3 677 42.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.8e-108 397.9 563 44.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 4.4e-106 390.6 660 40.3
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.9e-104 385.2 1168 30.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 8.1e-100 369.8 808 36.0
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.1e-95 355.1 726 35.5
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 2.5e-85 321.6 509 44.8
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.1e-83 314.7 711 34.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.7e-81 308.9 1506 25.9
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.6e-79 302.4 1605 25.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 7.2e-72 276.9 1374 27.3
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 3.6e-63 248.1 158 70.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.6e-58 231.9 1253 26.1
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 8.0e-55 220.3 323 41.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.0e-54 218.0 248 50.8
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.7e-50 205.3 1726 21.2
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.3e-49 203.0 190 54.7
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.5e-48 199.5 179 57.0
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.6e-42 179.5 105 77.1
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.8e-22 112.8 242 42.1
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.3e-22 112.5 340 29.4
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-22 112.1 140 42.9
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 7.8e-18 97.4 148 40.5
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.1e-16 93.6 186 37.1
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 7.3e-16 90.9 239 31.0
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 9.5e-16 90.5 192 32.3
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-15 90.1 83 53.0
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 6.2e-15 87.8 98 48.0
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.4e-14 86.7 146 36.3
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 1.4e-14 86.7 158 34.2
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 3.1e-14 85.5 81 54.3
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.6e-13 82.4 74 47.3
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.3e-12 77.4 77 46.8
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.1e-11 77.0 77 45.5
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 4.1e-11 75.1 185 33.0
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 1.2e-10 73.6 87 43.7
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 2.1e-10 72.8 68 44.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-09 69.3 64 46.9
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 4.3e-08 65.1 137 29.2
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 1.2e-07 63.5 175 26.3
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.1e-07 62.8 157 24.8
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.1e-07 62.8 157 25.5
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 3.6e-07 62.0 84 44.0
PSO675G3071 Papaver somniferum HOM05D002300 ORTHO05D002340 3.1e-06 58.9 326 24.8
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 4.0e-06 58.5 128 25.8
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 4.0e-06 58.5 128 25.8
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 4.0e-06 58.5 97 33.0
MSTRG.9753 Avicennia marina HOM05D002300 ORTHO05D002340 5.2e-06 58.2 193 23.8
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 6.8e-06 57.8 107 27.1
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 6.8e-06 57.8 107 27.1


User provided reference genes

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