Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.5e-181 638.6 324 100.0
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 4.9e-161 571.2 315 90.8
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 4.9e-161 571.2 315 90.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 1.5e-122 443.4 318 69.5
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.5e-122 443.4 323 69.0
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.8e-118 429.9 319 69.9
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.9e-114 414.8 328 63.7
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.7e-114 414.5 321 63.2
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.5e-113 411.0 321 64.5
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.5e-113 411.0 321 64.5
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.6e-111 406.8 315 65.4
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.7e-111 406.0 327 63.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 3.6e-111 405.6 317 64.0
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 6.1e-111 404.8 321 62.9
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.8e-110 403.3 315 64.8
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.8e-110 403.3 319 63.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.3e-110 402.9 323 63.2
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 2.3e-110 402.9 321 62.6
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 3.0e-110 402.5 325 63.1
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 5.2e-110 401.7 321 62.3
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 8.8e-110 401.0 321 63.6
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.2e-109 400.6 318 64.2
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.0e-109 399.8 333 62.8
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.4e-109 399.1 321 63.2
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 5.7e-109 398.3 316 63.3
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 5.7e-109 398.3 322 63.0
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 7.5e-109 397.9 321 62.3
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 9.7e-109 397.5 320 61.2
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.7e-108 396.7 322 61.2
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.2e-108 396.4 321 61.7
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.1e-107 394.0 323 59.8
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.4e-107 393.7 324 63.6
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.8e-107 393.3 325 60.0
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.8e-107 393.3 326 61.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.4e-107 392.9 323 63.5
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.3e-107 391.7 335 60.0
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 7.0e-107 391.3 322 63.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 7.0e-107 391.3 325 63.1
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.6e-106 390.2 322 63.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.6e-106 390.2 325 60.3
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 3.5e-106 389.0 320 60.3
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.5e-106 389.0 324 59.9
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.3e-105 387.1 323 60.4
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.7e-105 386.7 323 60.7
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 2.2e-105 386.3 336 59.5
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.0e-105 385.2 324 62.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.5e-104 383.6 319 61.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.5e-104 383.6 315 58.1
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 2.5e-104 382.9 318 60.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 4.2e-104 382.1 318 60.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.2e-104 382.1 324 58.6
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.5e-104 381.7 322 60.6
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.5e-104 381.7 324 61.4
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-103 380.6 318 60.7
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-103 380.6 324 61.7
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.6e-103 380.2 326 59.5
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.1e-103 379.8 316 58.2
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.7e-103 379.4 322 59.6
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 2.7e-103 379.4 326 58.6
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.7e-103 379.4 326 58.6
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 3.6e-103 379.0 326 58.6
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 4.7e-103 378.6 326 58.6
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.7e-103 378.6 326 59.8
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 6.1e-103 378.3 326 58.3
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 8.0e-103 377.9 322 60.6
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.0e-103 377.9 324 61.1
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.0e-103 377.9 324 61.4
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.0e-102 377.5 323 58.2
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.4e-102 377.1 326 58.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.8e-102 376.7 326 58.3
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.8e-102 376.7 323 57.9
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.3e-102 376.3 324 61.1
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 4.0e-102 375.6 326 58.6
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 4.0e-102 375.6 326 58.0
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 4.0e-102 375.6 326 57.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 5.2e-102 375.2 323 57.9
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 6.8e-102 374.8 326 57.7
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.8e-102 374.8 322 58.4
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 1.2e-101 374.0 326 57.1
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.2e-101 374.0 326 57.7
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.5e-101 373.6 336 58.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.5e-101 373.6 316 57.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.5e-101 373.6 325 59.7
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.5e-101 373.6 324 58.3
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.5e-101 373.6 315 57.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.0e-101 373.2 321 59.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 3.4e-101 372.5 326 57.7
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.4e-101 372.5 323 58.2
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 5.7e-101 371.7 324 58.0
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.3e-100 370.5 323 58.2
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.4e-99 367.1 326 57.4
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 4.1e-99 365.5 321 57.9
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 9.1e-99 364.4 355 53.5
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 9.1e-99 364.4 321 58.3
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 9.1e-99 364.4 323 56.3
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 5.0e-97 358.6 326 58.3
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 8.6e-97 357.8 316 56.6
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.1e-96 357.5 316 55.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 1.9e-96 356.7 322 57.5
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.5e-96 356.3 330 54.8
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.6e-95 353.6 322 55.9
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.8e-95 352.8 316 55.4
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 3.6e-95 352.4 315 54.6
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 4.7e-95 352.1 262 65.6
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 9.8e-93 344.4 320 56.6
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 6.3e-92 341.7 316 53.5
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 4.1e-91 339.0 326 54.6
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 6.6e-89 331.6 317 56.8
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.0e-86 324.3 302 54.6
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.4e-85 319.3 335 47.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.6e-80 302.0 257 61.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 9.5e-80 301.2 345 45.5
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.6e-71 273.9 334 42.8
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 3.1e-70 269.6 316 43.0
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 8.4e-60 235.0 222 56.3
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 9.0e-54 214.9 316 38.3
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.9e-51 207.2 257 44.0
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 2.4e-51 206.8 171 59.1
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 4.2e-51 206.1 171 59.1
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.7e-49 200.7 326 35.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.9e-49 199.5 171 62.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.5e-45 187.6 144 64.6
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.0e-45 187.2 158 58.2
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 6.7e-41 172.2 137 64.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.2e-36 157.1 137 60.6
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 2.7e-34 150.2 267 32.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.5e-34 149.8 186 44.6
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 3.9e-33 146.4 101 74.3
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 5.1e-33 146.0 346 29.5
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 2.8e-31 140.2 102 71.6
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-31 140.2 102 71.6
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 6.2e-31 139.0 160 41.9
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 8.2e-31 138.7 173 44.5
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.8e-30 137.5 102 69.6
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.8e-30 137.5 102 69.6
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 3.1e-30 136.7 102 69.6
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.2e-28 130.6 95 61.1
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 5.0e-28 129.4 112 55.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 6.1e-26 122.5 107 56.1
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 5.1e-25 119.4 103 57.3
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 5.7e-24 115.9 88 68.2
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 5.7e-24 115.9 88 68.2
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 2.8e-23 113.6 181 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 4.1e-22 109.8 170 38.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.9e-19 100.9 132 40.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.0e-17 95.1 123 41.5
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.9e-17 93.2 127 44.1
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-14 84.7 106 39.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.5e-11 72.8 43 79.1
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.7e-10 70.5 129 39.5
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.6e-08 63.9 41 68.3
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 7.4e-08 62.4 99 30.3
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 2.2e-07 60.8 260 23.5
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 6.3e-07 59.3 254 23.6
Medtr3g449990 Medicago truncatula HOM05D001610 ORTHO05D001585 8.2e-07 58.9 272 21.7
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 5.3e-06 56.2 120 33.3
Lalb_Chr04g0249001 Lupinus albus HOM05D001610 ORTHO05D001585 9.1e-06 55.5 253 22.9
MCO04G462 Micromonas commoda HOM05D015011 ORTHO05D017325 9.1e-06 55.5 282 21.6
TPR.G14758 Trifolium pratense HOM05D001610 ORTHO05D001585 9.1e-06 55.5 267 22.1


User provided reference genes

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