Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1777.7 855 100.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1744.6 855 98.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1317.0 890 71.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1301.2 857 71.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1278.8 782 76.5
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1278.5 861 70.5
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1255.4 857 69.4
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1242.6 860 69.2
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1234.6 856 68.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 858 68.8
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 854 67.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1217.6 855 68.1
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 855 68.0
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1211.1 857 67.3
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1211.1 887 66.7
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1206.8 854 66.6
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1206.0 858 66.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 854 67.2
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 859 65.9
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 857 65.3
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 851 66.6
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 828 67.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1188.7 860 66.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1188.7 857 65.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 856 66.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1179.1 856 64.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 860 65.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 859 66.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1176.4 860 65.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 861 65.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 856 65.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 853 64.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 860 65.1
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1171.4 859 65.8
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1171.0 813 68.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 864 64.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 856 65.9
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 976 59.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1167.9 851 65.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1167.5 858 65.4
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 858 65.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 816 67.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1159.4 872 63.6
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 859 65.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 862 64.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1154.4 853 64.8
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1152.5 859 65.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 857 63.9
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 861 63.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 854 65.0
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 857 65.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 852 65.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 855 64.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 865 63.9
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 856 63.9
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1141.7 858 64.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1140.9 862 63.6
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1136.7 865 63.5
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 861 63.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 864 61.8
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1134.8 858 63.2
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1131.7 851 63.8
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 855 63.3
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1129.8 859 63.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 873 62.4
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1120.9 860 63.3
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 858 63.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 879 61.5
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 852 62.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1107.8 853 62.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 858 62.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 855 62.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 858 61.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 857 62.5
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 862 61.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 856 62.1
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 855 60.6
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1093.2 854 60.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 855 61.9
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 859 60.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 0.0e+00 1084.3 854 61.1
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1084.3 841 61.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1082.8 860 60.6
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 865 60.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 888 58.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 856 60.3
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 860 60.2
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1077.4 862 60.4
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 5.8e-312 1074.7 876 59.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 5.8e-312 1073.5 856 60.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 9.8e-310 1066.6 825 59.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 894 58.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 4.9e-309 1064.3 848 61.1
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 8.3e-309 1063.5 758 65.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 6.2e-304 1047.3 872 56.8
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.8e-301 1038.1 731 66.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.3e-298 1029.6 844 57.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.7e-296 1021.1 885 58.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.1e-295 1018.5 722 66.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.4e-294 1014.6 766 62.9
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-293 1013.1 859 58.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.1e-292 1007.3 857 57.9
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.4e-287 993.0 773 60.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 9.0e-287 990.3 774 59.6
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.7e-285 986.1 790 58.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.9e-285 984.6 785 59.2
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.4e-284 983.0 776 59.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 4.6e-283 978.0 915 53.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.1e-282 974.5 787 59.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 8.7e-282 973.8 788 58.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-281 973.4 789 59.2
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 3.4e-278 961.8 791 57.9
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-277 959.9 819 57.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 4.5e-270 934.9 790 57.2
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 5.1e-266 921.4 727 59.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 8.8e-258 894.0 650 65.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 9.1e-255 884.0 815 53.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.5e-254 881.7 860 52.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 5.9e-254 881.3 858 50.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.1e-244 850.5 837 49.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 7.4e-241 837.8 776 50.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.1e-235 819.7 601 65.6
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.3e-231 805.1 780 51.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 6.5e-229 798.1 802 50.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.5e-229 798.1 789 49.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.0e-214 750.0 631 58.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.3e-204 715.7 693 49.5
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 2.8e-203 713.0 661 55.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.5e-201 704.9 474 68.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-197 693.7 791 46.1
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.7e-195 685.6 438 72.8
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-184 651.0 435 69.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 6.2e-171 605.5 434 67.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.9e-170 602.1 533 54.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 9.0e-170 601.7 467 60.8
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.4e-169 599.7 539 53.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-166 590.5 673 48.1
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 3.9e-165 586.3 875 37.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 7.9e-142 508.8 574 48.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 8.5e-128 462.2 781 37.3
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 4.7e-126 456.4 409 55.3
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.2e-125 453.0 323 65.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 9.4e-119 432.2 432 51.2
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 9.8e-116 422.2 273 73.6
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.7e-113 412.5 329 58.1
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 9.5e-103 379.0 389 49.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.8e-102 377.5 406 48.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.0e-97 361.3 402 47.3
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.0e-84 318.2 244 64.3
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.9e-83 314.3 531 34.3
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 4.1e-82 310.5 837 29.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 6.4e-67 260.0 204 61.8
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 4.3e-63 247.3 209 58.4
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.9e-53 213.4 159 57.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.7e-51 208.8 138 72.5
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.3e-48 199.1 198 54.0
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 6.2e-46 190.3 100 82.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.1e-39 169.5 99 79.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.6e-36 158.3 196 45.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 6.5e-27 127.1 81 69.1
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.1e-23 116.3 86 66.3
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 7.4e-23 113.6 84 63.1
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.7e-22 112.5 124 50.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.2e-20 106.3 69 71.0
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.2e-20 106.3 84 59.5
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 6.5e-19 100.5 95 55.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 5.1e-16 90.9 85 56.5
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 8.8e-16 90.1 61 65.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-14 85.9 40 90.0
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 3.7e-14 84.7 100 46.0
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.8e-13 82.4 50 76.0
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.1e-13 81.6 46 84.8
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.1e-13 81.3 83 53.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 5.0e-11 74.3 101 38.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 8.5e-11 73.6 99 39.4
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.6e-09 68.2 69 50.7


User provided reference genes

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