Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.5e-116 422.9 217 100.0
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.5e-116 422.9 217 100.0
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 5.2e-98 361.3 218 84.9
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.5e-97 357.5 219 82.2
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 83.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 84.1
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 84.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 6.3e-96 354.4 220 82.3
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 83.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.4e-95 353.2 218 82.6
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.4e-95 353.2 220 83.2
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 83.2
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.4e-95 352.4 217 84.3
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.4e-95 352.4 219 81.3
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 3.1e-95 352.1 220 83.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.1e-95 352.1 220 83.2
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 4.1e-95 351.7 218 83.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 82.3
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 82.3
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 82.3
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 7.0e-95 350.9 218 80.7
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 83.2
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.2e-94 350.1 216 83.3
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 81.8
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.7e-94 349.0 219 80.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 80.9
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 82.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.5e-94 348.6 215 82.8
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 81.2
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 81.4
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.8
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 4.5e-94 348.2 220 82.3
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 4.5e-94 348.2 220 82.3
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 4.5e-94 348.2 218 81.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.9e-94 347.8 218 82.1
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 5.9e-94 347.8 215 80.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 5.9e-94 347.8 218 82.1
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 5.9e-94 347.8 219 82.6
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 7.7e-94 347.4 220 81.8
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 7.7e-94 347.4 220 80.5
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 79.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 80.5
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 81.7
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 81.7
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 82.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.7e-93 346.3 218 80.7
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 80.8
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 81.3
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 2.3e-93 345.9 215 79.1
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 81.8
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.3e-93 345.9 219 81.3
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.9e-93 345.5 214 81.3
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.9e-93 345.5 217 80.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.8e-93 345.1 220 81.4
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.0e-93 344.7 219 81.3
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 218 81.7
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 82.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 81.6
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 81.6
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 8.6e-93 344.0 220 79.5
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.6e-93 344.0 219 80.4
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 214 80.8
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.1e-92 343.6 218 82.1
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.5e-92 343.2 218 80.7
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 80.0
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 80.0
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 79.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 81.2
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.5e-92 342.4 217 81.6
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.5e-92 342.4 218 81.2
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.3e-92 342.0 217 81.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 4.3e-92 341.7 217 80.6
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 80.0
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 7.3e-92 340.9 215 80.0
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.3e-92 340.9 221 79.6
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 9.5e-92 340.5 218 80.7
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.6e-91 339.7 220 79.1
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 82.1
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 2.1e-91 339.3 220 80.9
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.8e-91 339.0 218 78.9
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 2.8e-91 339.0 215 80.5
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.6e-91 338.6 217 80.2
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 77.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 3.6e-91 338.6 220 80.0
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 3.6e-91 338.6 220 79.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.6e-91 338.6 219 78.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.1e-91 337.8 216 79.6
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 8.0e-91 337.4 220 80.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 8.0e-91 337.4 220 77.3
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.0e-90 337.0 229 76.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 80.5
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.8e-90 336.3 217 78.8
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 3.0e-90 335.5 220 76.8
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.0e-90 335.5 220 78.6
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 78.2
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 78.2
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.0e-90 335.1 221 77.4
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.0e-90 335.1 219 79.0
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 8.9e-90 334.0 218 75.7
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 8.9e-90 334.0 216 79.6
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.2e-89 333.6 216 77.8
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-89 333.6 216 80.1
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.0e-89 332.8 218 78.9
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 3.4e-89 332.0 214 79.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 4.4e-89 331.6 216 76.9
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 7.5e-89 330.9 217 77.4
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 7.5e-89 330.9 219 77.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.3e-88 330.1 216 76.4
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.2e-88 329.3 222 76.1
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 4.9e-88 328.2 219 74.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.4e-87 326.6 217 76.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.8e-87 326.2 218 76.6
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.6e-86 323.2 221 76.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 4.6e-86 321.6 218 75.2
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 4.6e-86 321.6 218 75.7
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.7e-85 319.7 218 73.9
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 5.0e-85 318.2 223 75.8
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.5e-84 316.6 219 75.3
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.7e-80 303.1 216 72.7
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.1e-79 300.4 165 88.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.0e-78 296.2 173 81.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.7e-78 295.8 193 78.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.2e-75 287.0 226 68.1
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 8.1e-75 284.3 194 72.7
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 8.1e-75 284.3 165 84.8
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 4.9e-72 275.0 163 83.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.9e-71 273.1 174 76.4
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.4e-71 272.7 173 76.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.4e-71 272.7 193 73.6
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.1e-71 271.9 172 76.7
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.6e-69 264.6 175 75.4
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.2e-59 233.8 220 60.5
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 8.1e-59 231.1 217 56.7
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.0e-57 226.5 220 60.0
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.5e-52 209.5 218 56.4
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.6e-46 190.3 158 60.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.6e-46 188.7 174 56.3
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-44 184.1 137 74.5
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.9e-44 183.3 131 71.0
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 2.0e-41 173.3 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.0e-25 120.2 106 64.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.5e-15 85.5 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 5.5e-15 85.5 59 71.2
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 5.5e-07 58.9 54 53.7


User provided reference genes

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