Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO013G0267 Papaver somniferum HOM05D004014 ORTHO05D303417 4.7e-180 634.4 323 100.0
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 2.7e-50 203.4 209 53.1
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 3.9e-49 199.5 209 52.2
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 3.1e-46 189.9 211 49.8
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 3.1e-46 189.9 211 50.7
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 6.9e-46 188.7 211 48.3
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 2.6e-45 186.8 211 49.3
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 2.6e-45 186.8 211 49.3
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 3.4e-45 186.4 211 48.8
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 4.4e-45 186.0 211 48.8
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 4.4e-45 186.0 211 48.8
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 5.8e-45 185.7 211 48.3
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 7.6e-45 185.3 211 49.3
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 1.3e-44 184.5 195 50.3
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 2.2e-44 183.7 211 49.3
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 2.2e-44 183.7 211 47.9
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 2.2e-44 183.7 210 47.1
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 2.9e-44 183.3 210 48.1
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 2.9e-44 183.3 210 46.7
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 4.9e-44 182.6 211 47.9
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 6.4e-44 182.2 211 47.4
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 6.4e-44 182.2 212 48.1
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 6.4e-44 182.2 211 46.9
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 8.4e-44 181.8 211 47.9
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 8.4e-44 181.8 211 46.9
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 1.1e-43 181.4 211 47.4
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 1.1e-43 181.4 211 48.8
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 1.4e-43 181.0 211 47.4
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 1.4e-43 181.0 211 46.9
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 1.9e-43 180.6 211 48.8
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 1.9e-43 180.6 211 48.8
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 1.9e-43 180.6 211 47.4
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.9e-43 180.6 211 46.9
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 1.9e-43 180.6 211 46.9
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 2.4e-43 180.3 211 46.0
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 2.4e-43 180.3 211 46.4
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 2.4e-43 180.3 211 47.4
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 2.4e-43 180.3 211 47.9
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 2.4e-43 180.3 211 45.5
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 2.4e-43 180.3 189 50.8
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 3.2e-43 179.9 211 47.4
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 3.2e-43 179.9 211 46.4
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 3.2e-43 179.9 195 49.7
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 3.2e-43 179.9 211 46.4
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 3.2e-43 179.9 211 47.4
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 3.2e-43 179.9 210 44.8
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 3.2e-43 179.9 195 48.7
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 4.2e-43 179.5 211 47.4
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 4.2e-43 179.5 211 46.9
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 4.2e-43 179.5 211 48.8
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 4.2e-43 179.5 211 46.9
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 4.2e-43 179.5 199 50.3
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 5.4e-43 179.1 211 46.9
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 5.4e-43 179.1 210 46.7
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 7.1e-43 178.7 211 47.4
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 7.1e-43 178.7 211 46.9
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 7.1e-43 178.7 211 46.9
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 7.1e-43 178.7 211 45.5
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 9.3e-43 178.3 211 46.9
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 9.3e-43 178.3 211 46.9
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 9.3e-43 178.3 210 46.2
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 9.3e-43 178.3 211 46.9
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 9.3e-43 178.3 211 47.4
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 1.2e-42 177.9 210 45.7
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.2e-42 177.9 211 46.4
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 1.2e-42 177.9 211 46.9
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 1.2e-42 177.9 211 46.0
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.6e-42 177.6 211 46.9
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 2.1e-42 177.2 199 48.2
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 2.1e-42 177.2 211 46.0
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 2.1e-42 177.2 211 46.0
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 2.7e-42 176.8 210 46.7
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 3.5e-42 176.4 210 45.2
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 4.6e-42 176.0 209 46.4
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 4.6e-42 176.0 211 46.0
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 6.0e-42 175.6 211 46.9
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 6.0e-42 175.6 209 45.5
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 6.0e-42 175.6 209 45.5
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 6.0e-42 175.6 211 45.5
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 7.8e-42 175.3 209 45.0
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 7.8e-42 175.3 211 46.9
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 1.0e-41 174.9 211 47.4
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.3e-41 174.5 209 45.0
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 1.3e-41 174.5 211 45.0
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 1.7e-41 174.1 210 45.7
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 2.3e-41 173.7 211 45.5
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 2.3e-41 173.7 211 45.5
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 3.0e-41 173.3 211 45.5
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 3.0e-41 173.3 211 46.9
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 3.0e-41 173.3 211 46.0
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 3.9e-41 172.9 211 45.0
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 3.9e-41 172.9 211 46.0
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 6.6e-41 172.2 213 46.5
Manes.04G137700 Manihot esculenta HOM05D004014 ORTHO05D005890 6.6e-41 172.2 210 46.2
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 8.7e-41 171.8 227 44.1
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 8.7e-41 171.8 211 46.4
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.9e-40 170.6 211 45.0
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 4.3e-40 169.5 216 44.9
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 7.3e-40 168.7 209 44.0
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 7.3e-40 168.7 261 38.3
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 1.3e-39 167.9 211 45.0
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 4.8e-39 166.0 211 46.0
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 1.1e-38 164.9 211 45.5
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 1.1e-38 164.9 211 45.5
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 1.4e-38 164.5 201 45.3
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 2.4e-38 163.7 211 44.1
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 9.0e-38 161.8 211 43.1
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 9.0e-38 161.8 237 42.2
unitig_37.g12991 Utricularia gibba HOM05D004014 ORTHO05D005890 7.6e-37 158.7 212 43.4
Aa31LG8G7980 Aethionema arabicum HOM05D004014 ORTHO05D005890 1.7e-36 157.5 196 43.9
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 1.1e-35 154.8 211 42.7
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 1.2e-34 151.4 211 40.8
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 2.7e-34 150.2 201 46.8
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 2.7e-34 150.2 211 40.3
BcaC09g48419 Brassica carinata HOM05D004014 ORTHO05D005890 6.0e-34 149.1 184 46.2
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 8.7e-33 145.2 207 43.0
Oeu002520.1 Olea europaea HOM05D004014 ORTHO05D005890 2.5e-32 143.7 195 42.6
BolC1t04957H Brassica oleracea HOM05D004014 ORTHO05D005890 4.3e-32 142.9 215 41.9
C01p50000 Brassica napus HOM05D004014 ORTHO05D005890 5.6e-32 142.5 204 42.6
Mapoly0134s0030 Marchantia polymorpha HOM05D004014 ORTHO05D005890 4.8e-31 139.4 201 43.3
SMO307G0086 Selaginella moellendorffii HOM05D004014 ORTHO05D005890 6.2e-31 139.0 201 43.3
Cpa.g.sc131.36 Carica papaya HOM05D004014 ORTHO05D005890 8.1e-31 138.7 145 49.0
Pp3c7_7460 Physcomitrium patens HOM05D004014 ORTHO05D005890 6.9e-30 135.6 174 45.4
Duzib192G0196 Durio zibethinus HOM05D004014 ORTHO05D005890 4.6e-26 122.9 208 37.0
CBR_g3328 Chara braunii HOM05D004014 ORTHO05D005890 3.9e-25 119.8 170 37.6
AagrBONN_evm.TU.Sc2ySwM_117.798 Anthoceros agrestis HOM05D004014 ORTHO05D005890 1.9e-24 117.5 172 41.3
PSO832G2035 Papaver somniferum HOM05D004014 ORTHO05D005890 3.1e-22 110.2 128 49.2
Aqoxy3G00091 Aquilegia oxysepala HOM05D004014 ORTHO05D031250 5.8e-21 105.9 167 38.9
Ca_23623_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 2.9e-20 103.6 112 47.3
Sp1g38350 Schrenkiella parvula HOM05D004014 ORTHO05D005890 4.9e-20 102.8 144 42.4
PRCOL_00000017 Prasinoderma coloniale HOM05D004014 ORTHO05D005890 1.2e-18 98.2 163 36.2
MCO05G115 Micromonas commoda HOM05D004014 ORTHO05D005890 2.5e-16 90.5 200 32.0
Cre17.g726050 Chlamydomonas reinhardtii HOM05D004014 ORTHO05D005890 5.7e-16 89.4 183 33.9
SEGI_22647 Sequoiadendron giganteum HOM05D004014 ORTHO05D005890 3.1e-14 83.6 84 53.6
AUR62007854 Chenopodium quinoa HOM05D011798 ORTHO05D014352 1.2e-13 81.6 123 41.5
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 4.5e-13 79.7 209 30.6
Ah.10g033570 Amaranthus hybridus HOM05D004014 ORTHO05D005890 5.9e-13 79.3 84 50.0
Ca_11704_v3 Cicer arietinum L. HOM05D004014 ORTHO05D148986 5.0e-12 76.3 95 45.3
Lsat_1_v5_gn_1_44701 Lactuca sativa HOM05D004014 ORTHO05D005890 3.2e-11 73.6 71 56.3
Carub.0003s2129 Capsella rubella HOM05D004014 ORTHO05D005890 9.4e-11 72.0 78 46.2
Haze_26391 Corylus avellana HOM05D004014 ORTHO05D005890 4.6e-10 69.7 191 27.2
Pp3c11_21370 Physcomitrium patens HOM05D004014 ORTHO05D005890 1.0e-09 68.6 76 51.3
Ca_14199_v3 Cicer arietinum L. HOM05D004014 ORTHO05D149221 1.5e-08 64.7 94 42.6
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 9.7e-08 62.0 85 41.2
Aqoxy6G02681 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 3.1e-06 57.0 68 47.1


User provided reference genes

Program Settings