Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 0.0e+00 2276.5 1369 100.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 0.0e+00 2019.2 1376 87.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.6e-290 1003.4 1422 52.2
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.6e-288 996.1 1414 50.5
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.6e-285 986.9 1443 51.2
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 5.0e-279 965.3 1398 54.0
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.7e-276 954.5 1230 53.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.4e-270 937.2 1409 48.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 3.3e-267 926.0 1428 49.9
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 8.5e-263 911.4 1417 48.8
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 1.4e-260 904.0 1453 46.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 6.7e-260 901.7 1513 46.7
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.3e-257 892.1 1434 47.4
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.2e-253 880.9 1406 48.4
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.6e-253 880.6 1430 45.6
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 8.0e-253 878.2 1519 47.9
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.0e-252 877.9 1469 45.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 3.0e-252 876.3 1434 47.5
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.6e-251 873.2 1455 46.6
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 4.4e-251 872.5 1415 46.9
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.1e-249 866.3 1431 45.6
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 5.3e-249 865.5 1261 49.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.3e-249 865.5 1431 45.6
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.0e-248 863.6 1428 45.7
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.6e-248 863.2 1420 45.8
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.7e-247 860.5 1433 46.2
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.7e-245 852.4 1468 44.8
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.0e-243 847.0 1478 46.1
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.8e-241 840.5 1479 46.9
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 9.1e-241 838.2 1420 44.4
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.9e-240 835.5 1455 45.1
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.3e-239 834.3 1516 44.1
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.5e-238 830.1 1440 48.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 4.2e-238 829.3 1427 45.8
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.2e-237 827.8 1440 48.3
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.6e-237 827.4 1457 47.9
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.6e-235 820.1 1471 45.3
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 2.6e-235 820.1 1533 44.4
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 4.4e-235 819.3 1484 46.0
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 9.8e-235 818.1 1488 47.3
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 2.8e-234 816.6 1425 43.2
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 5.9e-232 808.9 1470 44.1
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.3e-231 807.7 1437 44.4
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.3e-231 807.7 1451 45.6
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.8e-229 800.0 1466 45.1
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 8.0e-229 798.5 1447 42.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.4e-228 797.7 1468 45.0
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.8e-228 797.3 1454 43.8
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.2e-226 790.4 1498 42.6
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.3e-223 781.2 1496 44.7
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 7.3e-222 775.4 1485 41.4
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.2e-221 774.6 1480 43.6
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 8.0e-221 771.9 1429 47.5
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.5e-219 767.7 1467 42.6
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.4e-219 766.1 1539 41.3
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 5.8e-219 765.8 1453 45.6
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 5.8e-219 765.8 1384 44.1
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.1e-217 759.6 1536 42.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 9.2e-217 758.4 1405 42.6
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.9e-214 750.7 1506 41.4
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.8e-212 742.3 1421 43.4
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.7e-210 736.5 1347 42.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.4e-203 713.0 1019 49.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 9.9e-203 711.8 1451 42.9
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.9e-201 707.6 1441 41.2
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 7.3e-198 695.7 1453 43.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.6e-197 694.5 1214 44.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 8.1e-197 692.2 1501 42.0
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 3.1e-196 690.3 1487 39.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 8.9e-196 688.7 1475 43.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.5e-195 688.0 1461 43.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.2e-194 684.1 1500 41.1
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.8e-194 683.3 1545 40.5
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.4e-193 681.4 1457 39.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.2e-193 679.9 1420 43.4
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.0e-191 675.2 1453 40.5
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 6.6e-191 672.5 1234 43.3
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 8.7e-191 672.2 1462 41.1
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.6e-189 666.8 725 58.2
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 2.2e-186 657.5 1483 42.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 8.4e-186 655.6 1653 36.8
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.4e-185 654.1 1473 40.1
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.3e-183 648.3 1474 43.0
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.1e-180 637.1 1428 39.2
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 6.9e-180 636.0 1400 39.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 2.0e-179 634.4 1450 41.1
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 4.9e-178 629.8 1451 41.1
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-176 624.8 1382 41.0
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 6.0e-176 622.9 1462 42.4
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 9.6e-174 615.5 1449 40.9
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 9.6e-174 615.5 1449 40.9
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.3e-173 615.1 1451 41.0
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 7.4e-166 589.3 1478 39.5
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.9e-158 564.7 1488 35.7
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 2.5e-158 564.3 1302 38.6
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 1.4e-156 558.5 1385 40.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 9.4e-153 545.8 1384 37.1
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 9.4e-145 519.2 1399 39.9
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 9.7e-142 509.2 1278 40.7
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 7.2e-137 493.0 1467 36.1
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 6.1e-128 463.4 1205 34.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.8e-125 453.8 586 53.8
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 4.1e-124 450.7 1256 35.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 3.5e-115 421.0 747 42.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.5e-105 386.3 562 45.4
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 3.0e-98 364.8 1283 32.6
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 6.2e-88 330.5 1446 30.6
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.4e-68 266.2 1491 26.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 3.0e-66 258.5 738 35.6
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.1e-59 235.7 796 32.0
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.5e-59 235.0 1342 26.6
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.2e-54 219.9 411 40.9
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 3.2e-52 211.8 356 49.2
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 9.3e-52 210.3 1408 26.1
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 9.3e-52 210.3 1124 28.3
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 5.1e-42 177.9 224 50.0
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 5.3e-39 167.9 375 35.2
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 7.7e-38 164.1 349 40.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.4e-30 138.7 175 49.1
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 6.5e-29 134.4 241 43.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.9e-28 132.9 331 36.6
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 5.5e-28 131.3 178 43.3
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 2.3e-26 125.9 86 70.9
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.5e-25 123.2 92 64.1
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.9e-20 106.3 271 49.1
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 2.7e-19 102.4 61 78.7
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.3e-16 93.6 110 48.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.3e-16 93.6 64 65.6
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 4.8e-16 91.7 365 36.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.1e-15 90.5 295 32.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.0e-15 87.8 68 64.7
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 6.5e-13 81.3 76 55.3
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.1e-11 76.3 309 23.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.1e-11 76.3 53 62.3
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.8e-10 73.2 70 58.6
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.8e-10 71.2 133 44.4
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.5e-09 70.1 50 66.0
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.6e-09 69.3 94 44.7
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 4.4e-09 68.6 78 42.3
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 9.8e-09 67.4 278 30.6
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-07 63.2 50 62.0
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.6e-06 60.1 91 45.1


User provided reference genes

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