Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.3e-253 878.6 519 100.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 2.2e-62 244.2 329 43.5
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 8.7e-59 232.3 329 47.7
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.3e-58 229.9 339 41.0
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-57 228.4 330 42.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.6e-57 228.0 330 41.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.8e-57 227.3 338 42.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.8e-57 226.5 330 41.8
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 6.2e-57 226.1 328 41.8
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 6.2e-57 226.1 328 41.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 6.2e-57 226.1 327 42.2
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 6.2e-57 226.1 330 42.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 8.1e-57 225.7 328 41.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.1e-56 225.3 330 42.7
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.4e-56 224.9 330 41.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.8e-56 224.6 341 41.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.8e-56 224.6 330 41.5
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.4e-56 224.2 330 41.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.0e-56 223.4 333 41.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 4.0e-56 223.4 346 41.3
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.9e-56 222.6 330 40.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 6.9e-56 222.6 330 41.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.0e-56 222.2 330 41.2
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 9.0e-56 222.2 330 42.1
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 9.0e-56 222.2 328 40.9
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.2e-55 221.9 330 41.8
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.2e-55 221.9 330 41.2
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.5e-55 221.5 328 41.2
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.5e-55 221.5 330 41.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.5e-55 221.5 330 40.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.5e-55 221.5 330 40.9
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.5e-55 221.5 330 41.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.0e-55 221.1 326 40.8
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.6e-55 220.7 326 40.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.6e-55 220.7 327 41.9
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.4e-55 220.3 327 41.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.4e-55 220.3 329 41.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.4e-55 220.3 330 41.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.5e-55 219.9 328 41.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 5.8e-55 219.5 327 41.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-55 219.5 327 41.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-55 219.5 327 41.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.8e-55 219.5 328 41.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 7.6e-55 219.2 330 40.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 9.9e-55 218.8 330 41.5
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 9.9e-55 218.8 330 41.2
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 9.9e-55 218.8 327 41.3
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 9.9e-55 218.8 329 40.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.3e-54 218.4 330 40.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.7e-54 218.0 330 40.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.2e-54 217.6 400 36.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.2e-54 217.6 339 40.7
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-54 217.6 339 40.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-54 217.6 328 39.9
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.9e-54 217.2 330 40.9
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.9e-54 217.2 310 41.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 3.8e-54 216.9 330 40.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 3.8e-54 216.9 330 40.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.8e-54 216.9 330 40.6
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.9e-54 216.5 327 41.3
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 4.9e-54 216.5 330 40.9
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 4.9e-54 216.5 326 40.5
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 4.9e-54 216.5 330 40.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.4e-54 216.1 335 40.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 8.4e-54 215.7 330 40.3
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.9e-53 214.5 338 41.4
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.9e-53 214.5 330 40.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.9e-53 214.5 330 40.0
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-53 214.2 337 39.5
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.2e-53 213.4 339 39.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 5.5e-53 213.0 331 40.5
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.3e-53 212.2 330 39.4
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.6e-52 211.5 330 40.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.6e-52 211.5 347 39.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.1e-52 211.1 222 51.8
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.1e-52 211.1 314 42.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.5e-52 210.3 330 38.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 7.9e-52 209.1 330 40.9
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.0e-51 208.8 330 40.3
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.0e-51 207.2 330 39.1
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 6.7e-51 206.1 332 38.9
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.7e-51 206.1 371 38.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.7e-51 206.1 359 37.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 8.7e-51 205.7 327 39.8
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 8.7e-51 205.7 329 39.8
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.1e-50 205.3 357 37.5
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.1e-50 205.3 332 38.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.5e-50 204.9 328 39.3
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-50 204.9 325 38.8
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.6e-50 203.0 329 39.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.4e-50 202.6 330 39.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 7.4e-50 202.6 330 39.1
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 7.4e-50 202.6 330 39.1
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 7.4e-50 202.6 330 39.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 7.4e-50 202.6 330 39.1
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.1e-49 201.1 338 45.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.7e-49 200.3 329 38.9
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.8e-49 199.9 330 38.5
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.8e-49 199.9 337 46.0
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.1e-48 197.2 332 37.3
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.0e-48 196.8 343 37.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 6.9e-48 196.1 328 37.8
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 9.0e-48 195.7 332 37.3
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.5e-47 194.9 328 39.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.0e-47 194.5 328 38.7
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.6e-47 194.1 330 37.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.4e-47 193.7 329 38.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-46 191.4 217 49.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-45 186.8 331 38.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 9.3e-45 185.7 289 40.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.5e-44 183.7 342 38.0
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 6.0e-44 183.0 340 36.2
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.0e-44 183.0 269 41.3
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.7e-41 173.7 365 35.1
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.8e-41 173.3 321 37.4
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.3e-41 172.9 291 38.5
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 6.9e-40 169.5 280 38.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 5.9e-39 166.4 342 33.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 8.7e-35 152.5 232 40.1
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.2e-33 147.9 261 38.3
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.8e-32 144.8 207 41.5
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.1e-32 144.1 268 36.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.0e-31 141.4 211 42.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.4e-31 140.6 330 33.3
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.4e-31 140.6 207 41.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.0e-30 139.0 207 40.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.7e-30 138.3 203 40.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.2e-28 132.1 339 33.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.8e-27 128.3 228 37.3
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.4e-24 118.6 213 37.6
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 6.5e-22 109.8 340 33.2
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.5e-22 109.4 177 40.1
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.3e-17 93.2 112 46.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.1e-16 90.9 178 33.7
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.9e-15 86.7 108 44.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.7e-15 86.3 108 45.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.0e-14 85.9 263 29.3
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.0e-14 85.9 108 45.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-13 82.0 177 32.8
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-08 65.1 103 40.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.1e-08 63.9 94 39.4


User provided reference genes

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