Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 3.6e-193 678.3 403 100.0
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.1e-82 311.2 413 46.0
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.3e-38 164.1 188 46.3
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.5e-37 161.4 188 45.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.5e-37 160.6 188 44.7
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.3e-37 160.2 188 44.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 4.3e-37 159.8 188 44.7
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 4.3e-37 159.8 188 46.3
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 4.3e-37 159.8 188 46.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 5.6e-37 159.5 188 44.7
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.6e-37 159.5 188 44.1
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 7.3e-37 159.1 188 44.1
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 7.3e-37 159.1 188 44.7
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 9.5e-37 158.7 188 44.7
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.2e-36 158.3 188 44.7
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.2e-36 158.3 188 44.1
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.2e-36 158.3 188 44.7
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-36 157.9 188 44.1
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-36 157.9 188 44.1
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.6e-36 157.9 188 44.1
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.6e-36 157.9 188 43.6
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 43.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 44.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 45.2
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 44.1
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 44.7
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.1e-36 157.5 188 43.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.8e-36 157.1 188 44.7
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.8e-36 157.1 188 43.6
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.8e-36 157.1 188 44.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 43.1
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 44.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 44.1
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 44.1
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 44.1
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 3.6e-36 156.8 188 44.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 4.7e-36 156.4 188 43.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 4.7e-36 156.4 188 44.7
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 4.7e-36 156.4 188 43.6
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.7e-36 156.4 188 44.1
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.7e-36 156.4 188 43.6
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 6.1e-36 156.0 188 43.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 6.1e-36 156.0 188 44.1
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 8.0e-36 155.6 188 44.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 8.0e-36 155.6 188 44.7
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-35 155.2 188 43.1
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-35 155.2 188 43.1
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.0e-35 155.2 188 44.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.0e-35 155.2 187 43.9
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.0e-35 155.2 188 43.6
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-35 154.8 188 44.1
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.4e-35 154.8 188 43.6
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.4e-35 154.8 188 44.7
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.4e-35 154.8 188 43.1
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-35 154.1 188 44.1
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.3e-35 154.1 188 44.1
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.3e-35 154.1 188 43.1
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-35 153.7 188 43.6
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 3.0e-35 153.7 188 44.1
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 4.0e-35 153.3 188 43.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 5.2e-35 152.9 188 42.6
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.2e-35 152.9 188 43.6
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 5.2e-35 152.9 188 42.6
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.2e-35 152.9 188 42.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.2e-35 152.9 188 43.6
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 6.8e-35 152.5 188 42.6
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.9e-35 152.1 188 42.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.2e-34 151.8 188 43.1
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.2e-34 151.8 188 42.0
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.2e-34 151.8 188 42.0
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.2e-34 151.8 188 42.0
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.5e-34 151.4 188 42.6
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.5e-34 151.4 188 43.1
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.0e-34 151.0 188 43.1
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.6e-34 150.6 188 42.6
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.6e-34 150.6 188 42.0
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 3.4e-34 150.2 185 43.8
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 4.4e-34 149.8 188 42.0
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 4.4e-34 149.8 188 42.6
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 4.4e-34 149.8 188 42.6
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 5.8e-34 149.4 184 41.3
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.8e-34 149.4 188 43.1
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 7.5e-34 149.1 188 42.6
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 9.8e-34 148.7 188 43.1
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.3e-33 148.3 188 42.6
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.3e-33 148.3 188 40.4
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.3e-33 148.3 180 43.3
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.3e-33 148.3 188 42.6
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.7e-33 147.9 183 43.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.2e-33 147.5 180 42.2
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-33 147.5 183 42.6
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-33 147.5 183 43.2
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.9e-33 147.1 189 41.8
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.7e-33 146.7 188 41.5
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.7e-33 146.7 180 42.2
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 4.9e-33 146.4 180 42.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.9e-33 146.4 180 42.8
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.9e-33 146.4 180 42.8
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.9e-33 146.4 188 42.0
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.9e-33 146.4 185 42.7
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 8.3e-33 145.6 193 42.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.1e-32 145.2 180 42.2
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.4e-32 144.8 180 41.7
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.8e-32 144.4 180 41.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-32 144.1 186 41.4
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.2e-32 143.7 188 41.0
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.2e-32 143.7 188 41.5
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 5.4e-32 142.9 188 41.5
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.4e-32 142.9 181 42.0
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 9.2e-32 142.1 180 41.1
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 9.2e-32 142.1 180 41.7
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 2.0e-31 141.0 187 41.2
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.0e-31 141.0 188 40.4
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.5e-31 140.2 188 40.4
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 6.0e-31 139.4 180 40.6
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-29 135.2 185 41.1
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.1e-29 135.2 203 38.9
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.2e-28 131.7 180 40.6
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.6e-28 131.3 163 41.1
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 4.7e-28 129.8 142 44.4
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 6.2e-28 129.4 146 43.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 8.0e-28 129.0 142 44.4
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.8e-27 127.9 188 40.4
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.1e-27 127.1 180 40.0
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.2e-27 126.3 142 44.4
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.2e-26 125.2 142 43.7
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-26 124.0 142 42.3
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 2.6e-26 124.0 188 38.3
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 5.8e-26 122.9 189 35.4
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 5.8e-26 122.9 185 38.9
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.2e-25 120.9 210 34.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-25 120.9 227 33.5
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.4e-25 119.4 185 38.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 6.4e-25 119.4 151 41.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 9.2e-24 115.5 182 38.5
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.7e-23 114.0 146 40.4
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.0e-23 112.8 151 39.1
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 6.0e-23 112.8 137 41.6
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.8e-23 112.5 138 41.3
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-22 112.1 215 32.6
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.3e-22 111.7 139 42.4
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-22 111.3 146 40.4
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 2.1e-20 104.4 188 35.1
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.1e-20 102.4 138 39.1
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.4e-19 101.7 218 36.2
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.4e-19 101.7 141 39.7
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 4.0e-19 100.1 150 40.0
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.9e-18 95.5 193 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 1.7e-17 94.7 124 38.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 3.7e-17 93.6 96 49.0
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.9e-16 91.3 96 46.9
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.4e-16 90.9 190 32.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.0e-15 86.3 98 45.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.3e-13 80.1 135 37.8
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.0e-10 71.2 189 30.7


User provided reference genes

Program Settings