Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 2.7e-192 675.2 357 100.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.0e-42 178.3 269 40.9
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.1e-39 168.3 243 41.2
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 5.8e-38 162.5 227 42.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 6.0e-35 152.5 217 41.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.9e-33 147.5 169 45.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 8.4e-21 105.5 160 36.9
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.1e-20 105.1 150 36.0
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.2e-20 103.2 160 37.5
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 4.2e-20 103.2 195 30.3
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 7.1e-20 102.4 152 33.6
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.1e-20 102.4 160 36.9
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 7.1e-20 102.4 160 36.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 9.3e-20 102.1 156 37.8
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 9.3e-20 102.1 161 32.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.2e-19 101.7 150 32.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-19 101.7 174 32.2
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-19 101.7 151 33.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.6e-19 101.3 159 35.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.6e-19 99.8 160 35.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.3e-18 98.2 160 35.0
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.8e-18 97.8 147 34.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 3.9e-18 96.7 171 33.9
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.1e-17 95.1 147 33.3
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-17 94.7 173 31.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.9e-17 94.4 152 34.2
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.9e-17 94.4 159 31.4
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.5e-17 94.0 156 35.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.5e-17 94.0 153 32.0
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.3e-17 93.6 166 33.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.7e-17 92.8 153 32.0
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 7.4e-17 92.4 170 31.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 9.7e-17 92.0 159 30.2
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 9.7e-17 92.0 153 30.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.6e-16 91.3 153 31.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.2e-16 90.9 162 32.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.2e-16 90.9 153 31.4
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.8e-16 90.5 157 33.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.8e-16 90.5 153 31.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.8e-16 90.5 151 32.5
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.8e-16 90.5 153 30.7
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.7e-16 90.1 165 32.7
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.3e-16 89.4 149 32.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 6.3e-16 89.4 165 31.5
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 8.2e-16 89.0 151 32.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 8.2e-16 89.0 154 33.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 8.2e-16 89.0 155 33.5
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.2e-16 89.0 149 32.2
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-15 88.6 151 33.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.8e-15 87.8 153 33.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.8e-15 87.8 151 33.1
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 2.4e-15 87.4 147 34.0
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 3.1e-15 87.0 153 29.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.1e-15 86.7 147 31.3
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.1e-15 86.7 150 32.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 9.0e-15 85.5 158 33.5
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.2e-14 85.1 159 26.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.2e-14 85.1 148 31.8
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.2e-14 85.1 153 30.1
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-14 85.1 153 30.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-14 85.1 153 30.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.2e-14 85.1 133 31.6
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-14 85.1 167 28.7
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.0e-14 84.3 161 30.4
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.0e-14 84.3 172 27.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-14 84.3 170 32.4
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.6e-14 84.0 254 28.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-14 84.0 153 30.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.6e-14 84.0 146 33.6
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.6e-14 84.0 141 29.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.4e-14 83.6 168 29.2
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-14 83.6 153 29.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.5e-14 83.2 154 30.5
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.5e-14 83.2 171 28.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.9e-14 82.8 150 28.7
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.9e-14 82.8 150 28.7
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 7.6e-14 82.4 167 32.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 7.6e-14 82.4 173 31.2
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.9e-13 80.5 148 31.8
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 3.8e-13 80.1 94 39.4
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.8e-13 80.1 147 29.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 3.8e-13 80.1 175 29.7
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.0e-13 79.7 152 28.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.0e-13 79.7 152 28.3
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 5.0e-13 79.7 153 29.4
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.0e-13 79.7 149 28.2
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-12 78.2 168 30.4
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-12 78.2 135 31.9
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.4e-12 78.2 176 29.0
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.4e-12 78.2 114 36.8
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.4e-12 78.2 148 29.7
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-12 78.2 159 32.1
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.9e-12 77.8 149 28.9
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.2e-12 77.0 153 31.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 3.2e-12 77.0 151 28.5
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-12 76.6 155 30.3
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.5e-12 76.3 168 29.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 5.5e-12 76.3 170 28.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 5.5e-12 76.3 102 38.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 5.5e-12 76.3 154 27.3
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 7.2e-12 75.9 170 27.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 7.2e-12 75.9 170 27.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.3e-12 75.5 148 27.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 9.3e-12 75.5 157 28.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.2e-11 75.1 136 29.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.2e-11 75.1 152 28.9
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.6e-11 74.7 120 30.0
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.6e-11 74.7 155 29.0
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.7e-11 73.9 116 31.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.7e-11 73.9 148 28.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.6e-11 73.6 188 27.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.6e-11 73.2 158 30.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.1e-11 72.8 155 29.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 7.9e-11 72.4 156 29.5
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-10 72.0 172 28.5
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.3e-10 71.6 95 36.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.8e-10 71.2 155 26.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.3e-10 70.9 163 26.4
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.3e-10 70.9 152 24.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 5.1e-10 69.7 108 31.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.7e-10 69.3 104 29.8
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 8.8e-10 68.9 163 29.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 8.8e-10 68.9 169 32.0
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.9e-09 67.8 164 29.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-09 67.4 159 23.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.5e-09 67.4 159 23.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.5e-09 67.4 170 25.9
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 3.3e-09 67.0 159 22.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 3.3e-09 67.0 155 24.5
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.3e-09 66.6 159 22.6
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.3e-09 66.6 159 22.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.3e-09 66.6 152 27.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 7.4e-09 65.9 112 32.1
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.7e-09 65.5 156 28.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 9.7e-09 65.5 172 29.7
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-08 64.3 138 30.4
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.3e-08 62.8 147 27.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.4e-07 61.6 88 39.8
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.4e-07 60.8 147 24.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 3.1e-07 60.5 120 33.3
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.1e-07 60.1 152 23.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.5e-06 58.2 152 22.4
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.0e-06 57.8 157 26.1
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.6e-06 57.4 77 37.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.5e-06 56.6 171 22.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 7.7e-06 55.8 152 23.7


User provided reference genes

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