Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.7e-271 938.7 480 100.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.3e-113 412.9 475 47.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.7e-109 400.6 494 50.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.8e-109 399.4 472 47.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 6.5e-109 398.7 472 47.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.5e-109 398.7 478 47.3
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.5e-108 396.7 478 48.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-108 396.4 478 46.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.2e-107 394.4 479 48.0
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.1e-107 393.7 472 47.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.6e-107 392.9 475 46.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 6.1e-107 392.1 472 46.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.4e-106 391.0 478 46.4
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.3e-106 390.2 475 46.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.9e-106 389.4 479 46.1
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 5.1e-106 389.0 472 46.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 5.1e-106 389.0 472 46.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-105 387.9 472 47.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.1e-105 387.9 478 45.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-105 387.9 472 47.5
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.5e-105 387.5 478 46.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.0e-105 387.1 479 46.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.5e-105 386.7 475 45.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 4.3e-105 386.0 475 46.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.3e-105 386.0 478 45.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-105 385.6 472 46.8
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.7e-105 385.6 478 46.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 9.7e-105 384.8 476 46.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-104 384.4 472 46.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.3e-104 384.4 475 45.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.7e-104 384.0 472 46.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.2e-104 383.6 472 45.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.8e-104 383.3 479 45.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.7e-104 382.9 472 46.4
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.8e-104 382.5 479 46.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 6.3e-104 382.1 472 46.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 6.3e-104 382.1 479 45.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.4e-103 380.9 472 45.3
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.8e-103 380.6 478 45.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.8e-103 380.6 476 45.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.4e-103 380.2 475 44.4
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.1e-103 379.4 475 45.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.3e-103 379.0 472 46.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 6.9e-103 378.6 472 44.9
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 6.9e-103 378.6 476 45.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.9e-103 378.6 480 46.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 9.1e-103 378.3 475 45.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 9.1e-103 378.3 478 45.0
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 9.1e-103 378.3 478 45.8
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 9.1e-103 378.3 466 48.3
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.2e-102 377.9 475 45.7
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.2e-102 377.9 475 45.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.0e-102 377.1 474 44.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.0e-102 377.1 475 45.3
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.0e-102 377.1 498 44.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.6e-102 376.7 475 45.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.6e-102 376.7 493 45.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.6e-102 376.7 472 44.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.4e-102 376.3 475 45.9
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.5e-102 375.9 480 45.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.9e-102 375.6 475 44.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 7.7e-102 375.2 475 45.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.0e-101 374.8 478 44.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.0e-101 374.8 475 45.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-101 374.4 489 44.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.3e-101 374.4 472 45.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.8e-101 372.9 507 43.6
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.0e-101 372.5 475 44.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.5e-101 372.1 476 45.6
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.4e-100 370.9 475 44.8
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-100 370.9 487 44.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.9e-100 370.5 475 44.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.2e-100 369.8 507 43.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.2e-100 369.8 475 45.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.2e-100 369.8 494 44.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 5.5e-100 369.0 486 46.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-99 367.9 475 43.2
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.7e-99 366.7 475 43.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.7e-99 366.7 475 44.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.6e-99 366.3 472 45.3
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.4e-98 364.4 475 44.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.8e-98 364.0 475 43.6
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-98 364.0 475 43.6
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-98 363.6 520 42.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 5.1e-98 362.5 509 42.4
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-97 359.4 472 44.7
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-97 359.0 472 44.3
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.4e-97 358.6 472 44.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-96 357.1 475 44.0
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-96 357.1 475 44.0
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.7e-96 356.3 489 42.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.8e-96 355.9 475 42.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.1e-95 354.8 532 42.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.4e-95 354.4 475 42.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.4e-95 353.6 479 44.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-95 353.6 475 43.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.4e-95 353.6 475 42.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.0e-95 352.1 492 42.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 7.0e-95 352.1 468 45.3
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.2e-94 351.3 472 44.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.2e-94 351.3 475 43.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.2e-94 351.3 503 40.8
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.2e-93 347.1 479 43.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.9e-93 346.7 489 42.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.9e-93 346.7 472 43.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-93 345.9 473 43.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.5e-92 344.4 475 44.6
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.2e-92 343.2 478 43.1
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.6e-91 340.9 480 43.3
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.7e-91 339.3 475 41.3
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 6.1e-91 339.0 489 41.3
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.4e-90 337.8 475 42.7
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-90 337.0 475 42.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.3e-90 337.0 404 47.5
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.1e-89 334.7 476 43.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.4e-89 332.8 475 42.3
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 8.2e-88 328.6 475 41.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.8e-87 327.4 366 50.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.1e-87 326.6 473 42.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-86 324.7 367 47.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.5e-84 317.8 361 47.9
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 5.5e-84 315.8 388 46.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.4e-82 311.2 610 35.1
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.2e-81 308.1 479 41.1
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.4e-79 299.3 368 47.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.9e-76 290.8 527 37.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.2e-75 288.1 387 43.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 3.3e-68 263.5 318 46.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 7.5e-65 252.3 321 43.9
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.7e-64 250.0 409 40.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 3.7e-64 250.0 299 47.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-62 244.2 299 46.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-61 240.7 245 53.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-60 236.5 482 34.4
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.8e-59 233.8 479 36.3
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.0e-57 227.6 502 36.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-55 221.9 217 54.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.0e-54 217.6 223 52.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.6e-52 209.5 281 43.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-49 201.4 213 52.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-49 201.4 286 40.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.3e-40 171.8 281 37.7
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-37 161.4 228 41.2
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.0e-37 160.6 231 40.3
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.6e-37 159.5 281 40.2
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-36 158.7 231 39.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.1e-34 150.6 246 39.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 9.9e-33 145.6 231 35.9
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.8e-27 127.5 152 48.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 8.1e-27 125.9 205 39.0
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.4e-26 124.4 133 47.4
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.0e-26 122.5 190 41.1
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.5e-22 110.5 121 48.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.0e-21 107.5 115 51.3
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.1e-21 106.7 112 49.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.9e-20 104.8 161 41.6
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.4e-20 102.8 276 30.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-19 101.7 144 38.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.6e-17 94.4 201 33.8
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.8e-17 93.2 69 60.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.5e-15 86.7 63 60.3
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-12 79.0 91 45.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-11 75.5 163 33.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.7e-11 73.9 73 54.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.8e-10 71.6 79 50.6
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.0e-09 68.2 82 41.5
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.9e-08 64.3 61 52.5
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 4.9e-08 63.5 59 54.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 6.5e-08 63.2 46 58.7
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.9e-07 61.6 77 45.5
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 7.1e-07 59.7 76 42.1
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-06 57.4 174 30.5
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 7.9e-06 56.2 107 36.4


User provided reference genes

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