Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.4e-73 279.6 150 100.0
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 9.6e-27 124.0 124 52.4
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.3e-26 123.6 124 52.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.3e-26 123.6 132 52.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-26 123.2 127 52.8
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.6e-26 123.2 127 52.8
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.6e-26 123.2 127 52.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.6e-26 123.2 127 52.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.1e-26 122.9 127 52.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-26 122.9 127 52.8
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.1e-26 122.9 127 52.8
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.8e-26 122.5 124 53.2
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.8e-26 122.5 132 51.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.8e-26 122.5 127 52.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.7e-26 122.1 127 52.8
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 3.7e-26 122.1 127 52.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.7e-26 122.1 127 52.0
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 4.8e-26 121.7 130 50.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.8e-26 121.7 124 51.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 6.2e-26 121.3 124 52.4
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 6.2e-26 121.3 127 52.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.2e-26 121.3 124 51.6
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.2e-26 120.9 127 50.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 8.2e-26 120.9 124 51.6
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 8.2e-26 120.9 127 52.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-25 120.2 127 50.4
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.4e-25 120.2 127 51.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.4e-25 120.2 124 50.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.4e-25 120.2 127 51.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.4e-25 120.2 128 50.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-25 119.8 128 49.2
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-25 119.4 127 52.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.4e-25 119.4 124 50.0
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.4e-25 119.4 128 49.2
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.4e-25 119.4 124 51.6
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.4e-25 119.4 124 50.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.4e-25 119.4 124 50.8
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.4e-25 119.4 128 50.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.1e-25 119.0 127 51.2
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.1e-25 119.0 127 49.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 3.1e-25 119.0 127 49.6
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.1e-25 119.0 124 50.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.1e-25 119.0 124 50.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.1e-25 119.0 124 50.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.0e-25 118.6 124 50.0
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 4.0e-25 118.6 127 51.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.3e-25 118.2 124 50.0
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.3e-25 118.2 127 50.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.3e-25 118.2 128 50.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 5.3e-25 118.2 128 48.4
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.9e-25 117.9 124 50.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.9e-25 117.9 128 48.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 9.0e-25 117.5 127 48.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-24 117.1 128 47.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.2e-24 117.1 127 48.0
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.2e-24 117.1 124 49.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.2e-24 117.1 127 48.8
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.2e-24 117.1 127 48.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.5e-24 116.7 127 48.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.5e-24 116.7 127 48.8
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.5e-24 116.7 127 48.8
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.5e-24 116.7 128 47.7
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.5e-24 116.7 124 48.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.5e-24 116.7 128 48.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.5e-24 116.7 124 51.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.0e-24 116.3 127 51.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.0e-24 116.3 127 50.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.0e-24 116.3 127 50.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.0e-24 116.3 136 47.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.0e-24 116.3 122 50.0
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.6e-24 115.9 127 49.6
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.6e-24 115.9 127 49.6
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.6e-24 115.9 127 47.2
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.6e-24 115.9 127 47.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.4e-24 115.5 123 49.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.4e-24 115.5 127 49.6
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.4e-24 115.5 127 48.0
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.4e-24 115.5 126 46.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.4e-24 115.5 127 48.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.4e-24 115.5 127 48.0
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.4e-24 115.5 128 48.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.5e-24 115.2 127 50.4
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.5e-24 115.2 122 49.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 4.5e-24 115.2 123 49.6
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 4.5e-24 115.2 127 48.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 5.8e-24 114.8 122 50.0
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.8e-24 114.8 127 49.6
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 5.8e-24 114.8 130 47.7
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 5.8e-24 114.8 124 48.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 7.6e-24 114.4 124 50.8
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 7.6e-24 114.4 122 49.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.6e-24 114.4 127 47.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.6e-24 114.4 127 47.2
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 7.6e-24 114.4 134 45.5
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-23 114.0 126 49.2
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.0e-23 114.0 127 47.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.3e-23 113.6 127 48.8
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.7e-23 113.2 126 47.6
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-23 113.2 124 48.4
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.2e-23 112.8 127 48.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.2e-23 112.8 128 48.4
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.2e-23 112.8 127 48.8
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.2e-23 112.8 127 48.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.9e-23 112.5 124 48.4
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.9e-23 112.5 128 46.9
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-23 112.1 124 46.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-23 112.1 124 46.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 3.8e-23 112.1 124 46.0
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.8e-23 112.1 130 46.2
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.9e-23 111.7 122 49.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.9e-23 111.7 122 49.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.9e-23 111.7 124 51.6
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.9e-23 111.7 128 48.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.5e-23 111.3 123 48.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.5e-23 111.3 122 48.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.4e-23 110.9 126 47.6
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 8.4e-23 110.9 124 47.6
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.4e-23 110.9 127 46.5
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 8.4e-23 110.9 128 48.4
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.1e-22 110.5 127 48.0
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.1e-22 110.5 128 49.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-22 110.2 127 49.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.9e-22 109.8 123 47.2
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.9e-22 109.8 123 47.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.9e-22 109.8 126 46.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.2e-22 108.6 124 46.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 5.5e-22 108.2 124 47.6
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 7.1e-22 107.8 127 46.5
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 9.3e-22 107.5 124 46.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.6e-21 106.7 121 44.6
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.1e-21 106.3 121 45.5
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 7.9e-21 104.4 131 44.3
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-20 103.2 100 50.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-20 102.8 124 45.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.7e-20 101.3 122 45.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.7e-20 100.9 127 40.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.7e-20 100.9 127 40.9
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 5.7e-19 98.2 122 45.1
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 7.4e-19 97.8 109 48.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.6e-18 96.7 91 52.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.4e-17 93.6 89 50.6
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.1e-17 92.0 99 48.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.4e-16 89.0 85 51.8
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 7.6e-16 87.8 81 50.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 6.5e-15 84.7 137 36.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.2e-14 82.0 102 47.1
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.3e-11 72.0 99 41.4
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 7.4e-11 71.2 91 41.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 3.7e-10 68.9 105 42.9
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 6.3e-10 68.2 86 37.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 8.2e-10 67.8 94 34.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.6e-08 62.8 123 34.1
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 4.5e-08 62.0 98 35.7
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 7.7e-08 61.2 65 53.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 7.7e-08 61.2 65 53.8


User provided reference genes

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