Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.3e-161 573.2 320 100.0
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 4.4e-77 292.4 269 60.2
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 2.4e-75 286.6 269 58.7
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 4.5e-74 282.3 258 59.7
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.5e-72 277.3 277 55.2
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.6e-71 273.9 289 51.2
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 2.7e-71 273.1 292 52.7
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 3.6e-71 272.7 290 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.0e-70 271.2 287 50.9
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.3e-70 270.0 264 56.8
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 6.7e-70 268.5 281 53.0
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.5e-69 267.3 259 57.1
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 4.4e-69 265.8 282 53.5
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 4.4e-69 265.8 290 51.4
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 5.7e-69 265.4 257 56.8
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 7.5e-69 265.0 257 55.6
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 7.5e-69 265.0 272 55.1
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 9.7e-69 264.6 264 56.4
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 9.7e-69 264.6 275 53.5
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.3e-68 264.2 258 56.6
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.7e-68 263.8 258 57.0
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.7e-68 263.8 258 56.2
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 2.2e-68 263.5 262 57.3
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 2.2e-68 263.5 258 57.0
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.8e-68 263.1 263 54.8
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.8e-68 263.1 286 52.1
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 3.7e-68 262.7 263 55.1
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 3.7e-68 262.7 259 55.6
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 3.7e-68 262.7 259 55.2
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.7e-68 262.7 258 56.6
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 3.7e-68 262.7 259 56.4
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 6.3e-68 261.9 259 56.4
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 6.3e-68 261.9 258 53.1
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 8.2e-68 261.5 263 56.7
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 8.2e-68 261.5 275 53.8
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.4e-67 260.8 274 53.3
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.4e-67 260.8 259 55.6
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.8e-67 260.4 268 54.9
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 3.1e-67 259.6 294 50.0
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 3.1e-67 259.6 258 54.7
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 3.1e-67 259.6 258 56.2
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.1e-67 259.6 295 51.5
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 3.1e-67 259.6 259 54.1
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 4.1e-67 259.2 319 48.0
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.3e-67 258.8 259 56.0
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 5.3e-67 258.8 263 55.5
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 7.0e-67 258.5 268 54.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 7.0e-67 258.5 258 55.4
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 7.0e-67 258.5 288 51.4
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 7.0e-67 258.5 289 51.2
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 9.1e-67 258.1 258 55.4
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 9.1e-67 258.1 268 53.7
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 9.1e-67 258.1 292 51.4
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 9.1e-67 258.1 254 54.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 9.1e-67 258.1 257 54.5
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 9.1e-67 258.1 254 54.7
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.2e-66 257.7 275 53.5
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.2e-66 257.7 257 56.0
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 1.2e-66 257.7 275 54.2
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 1.6e-66 257.3 258 55.0
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.6e-66 257.3 265 54.7
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 2.0e-66 256.9 255 53.7
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 2.0e-66 256.9 258 55.0
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 2.0e-66 256.9 258 55.0
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.7e-66 256.5 257 54.5
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 3.5e-66 256.1 291 51.2
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 3.5e-66 256.1 289 51.2
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 3.5e-66 256.1 268 53.4
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 3.5e-66 256.1 289 50.5
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.5e-66 255.8 257 54.1
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 4.5e-66 255.8 290 51.0
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 4.5e-66 255.8 288 51.0
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 7.7e-66 255.0 274 52.2
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.3e-65 254.2 242 57.0
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.3e-65 254.2 308 49.0
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.3e-65 254.2 284 52.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 2.2e-65 253.4 242 56.6
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 3.8e-65 252.7 309 48.9
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 3.8e-65 252.7 257 52.5
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 5.0e-65 252.3 285 52.3
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 6.5e-65 251.9 241 56.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 6.5e-65 251.9 265 53.6
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 8.5e-65 251.5 287 50.9
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.9e-64 250.4 257 53.3
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.2e-63 247.7 277 52.7
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 2.1e-63 246.9 258 53.1
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 2.1e-63 246.9 285 49.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 2.7e-63 246.5 290 49.7
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 4.7e-63 245.7 291 50.2
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.4e-62 244.2 258 53.1
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.8e-62 243.8 247 53.8
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.3e-62 243.4 247 53.8
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 5.7e-61 238.8 263 52.1
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 7.5e-61 238.4 259 52.5
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 9.8e-61 238.0 298 48.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 2.4e-59 233.4 232 55.2
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 7.2e-56 221.9 219 53.9
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 6.8e-54 215.3 214 56.5
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 7.5e-53 211.8 259 50.6
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 9.8e-53 211.5 264 46.6
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 2.8e-52 209.9 255 50.2
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 1.1e-51 208.0 191 57.1
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 5.4e-51 205.7 217 54.4
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.0e-50 203.8 202 55.9
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.1e-48 198.0 199 53.3
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.5e-48 197.6 194 55.7
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 5.6e-48 195.7 276 46.7
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.6e-47 194.1 395 36.2
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 5.2e-46 189.1 400 35.5
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 2.6e-45 186.8 174 58.6
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.3e-41 174.5 281 43.8
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 4.3e-40 169.5 156 55.8
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 8.0e-39 165.2 176 53.4
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 7.5e-37 158.7 241 40.7
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 9.8e-37 158.3 152 57.2
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.6e-34 149.4 134 57.5
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.5e-32 143.7 199 47.7
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 9.5e-32 141.7 175 46.3
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 5.8e-29 132.5 117 59.0
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.2e-28 130.6 136 53.7
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 5.1e-25 119.4 282 34.8
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.5e-24 117.1 129 51.2
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-22 111.7 191 37.2
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.5e-21 107.8 103 52.4
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 4.3e-16 89.7 91 54.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.2e-12 77.4 118 46.6
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 2.7e-10 70.5 50 72.0
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 8.7e-09 65.5 183 30.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 3.6e-07 60.1 60 55.0
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 6.2e-07 59.3 36 75.0
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 1.1e-06 58.5 242 25.2
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.8e-06 57.8 32 81.2


User provided reference genes

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