Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003156 Prasinoderma coloniale HOM05D004588 ORTHO05D005365 3.3e-78 295.0 157 100.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 3.8e-10 68.9 80 47.5
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 7.3e-09 64.7 89 43.8
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 1.2e-08 63.9 88 43.2
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.2e-08 63.9 75 49.3
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 1.6e-08 63.5 89 40.4
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 1.6e-08 63.5 77 44.2
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 2.1e-08 63.2 77 44.2
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 2.1e-08 63.2 77 44.2
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 2.1e-08 63.2 77 44.2
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 2.8e-08 62.8 77 44.2
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 2.8e-08 62.8 89 39.3
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 2.8e-08 62.8 89 39.3
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 2.8e-08 62.8 77 41.6
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 3.6e-08 62.4 77 44.2
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 3.6e-08 62.4 77 44.2
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 3.6e-08 62.4 87 41.4
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 3.6e-08 62.4 77 44.2
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 4.7e-08 62.0 75 45.3
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 4.7e-08 62.0 89 40.4
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 4.7e-08 62.0 88 39.8
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 4.7e-08 62.0 88 39.8
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 6.1e-08 61.6 77 42.9
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 6.1e-08 61.6 77 42.9
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 8.0e-08 61.2 84 44.0
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 8.0e-08 61.2 93 39.8
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 8.0e-08 61.2 75 46.7
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 8.0e-08 61.2 77 42.9
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.4e-07 60.5 84 44.0
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.4e-07 60.5 84 44.0
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.4e-07 60.5 93 39.8
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 1.4e-07 60.5 88 40.9
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 1.4e-07 60.5 77 42.9
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 1.8e-07 60.1 77 42.9
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 1.8e-07 60.1 77 42.9
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 1.8e-07 60.1 84 41.7
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 1.8e-07 60.1 77 42.9
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 2.3e-07 59.7 77 41.6
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 2.3e-07 59.7 77 41.6
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 2.3e-07 59.7 77 42.9
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 2.3e-07 59.7 85 42.4
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 3.0e-07 59.3 84 41.7
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 3.0e-07 59.3 77 41.6
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 3.0e-07 59.3 75 41.3
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 42.9
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 40.3
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 42.9
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.0e-07 58.9 88 40.9
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.0e-07 58.9 88 40.9
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 41.6
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 40.3
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 41.6
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 41.6
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 4.0e-07 58.9 87 39.1
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 4.0e-07 58.9 77 40.3
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 5.2e-07 58.5 77 40.3
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 5.2e-07 58.5 77 41.6
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 5.2e-07 58.5 77 40.3
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 5.2e-07 58.5 77 40.3
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 5.2e-07 58.5 77 41.6
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 40.3
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 41.6
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 6.8e-07 58.2 77 42.9
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 6.8e-07 58.2 68 47.1
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 8.9e-07 57.8 77 41.6
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 8.9e-07 57.8 75 44.0
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 8.9e-07 57.8 77 44.2
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 8.9e-07 57.8 77 42.9
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 8.9e-07 57.8 77 41.6
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 8.9e-07 57.8 108 36.1
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.2e-06 57.4 79 44.3
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 41.6
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 1.2e-06 57.4 88 38.6
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 41.6
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 41.6
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 1.2e-06 57.4 99 39.4
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.2e-06 57.4 68 48.5
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.5e-06 57.0 77 39.0
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 1.5e-06 57.0 80 41.2
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 1.5e-06 57.0 92 35.9
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 1.5e-06 57.0 77 40.3
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 1.5e-06 57.0 77 41.6
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 1.5e-06 57.0 77 40.3
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 2.0e-06 56.6 99 39.4
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 2.0e-06 56.6 108 36.1
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 2.0e-06 56.6 77 41.6
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 2.0e-06 56.6 75 41.3
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 2.0e-06 56.6 114 34.2
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.0e-06 56.6 80 40.0
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.0e-06 56.6 77 40.3
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.0e-06 56.6 77 40.3
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 39.0
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 39.0
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 2.6e-06 56.2 96 35.4
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 39.0
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 2.6e-06 56.2 75 42.7
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 39.0
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 2.6e-06 56.2 75 42.7
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 2.6e-06 56.2 84 39.3
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 41.6
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 2.6e-06 56.2 77 40.3
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 2.6e-06 56.2 88 38.6
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 3.4e-06 55.8 68 47.1
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 3.4e-06 55.8 75 42.7
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 3.4e-06 55.8 68 47.1
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 3.4e-06 55.8 68 47.1
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 3.4e-06 55.8 75 42.7
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 3.4e-06 55.8 75 42.7
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 3.4e-06 55.8 77 39.0
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 3.4e-06 55.8 80 41.2
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 3.4e-06 55.8 79 41.8
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.4e-06 55.8 68 44.1
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 3.4e-06 55.8 80 38.8
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 4.4e-06 55.5 77 39.0
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 4.4e-06 55.5 77 40.3
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 4.4e-06 55.5 84 39.3
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 5.8e-06 55.1 68 47.1
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 5.8e-06 55.1 75 42.7
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 5.8e-06 55.1 75 42.7
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 5.8e-06 55.1 68 47.1
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 5.8e-06 55.1 99 39.4
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 5.8e-06 55.1 68 47.1
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 5.8e-06 55.1 74 44.6
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 5.8e-06 55.1 90 38.9
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 5.8e-06 55.1 92 35.9
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 5.8e-06 55.1 84 40.5
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 5.8e-06 55.1 68 47.1
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 7.5e-06 54.7 86 39.5
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 7.5e-06 54.7 68 47.1
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 7.5e-06 54.7 84 38.1
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 7.5e-06 54.7 68 44.1
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 9.8e-06 54.3 68 44.1
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 9.8e-06 54.3 68 44.1
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 9.8e-06 54.3 68 44.1
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 9.8e-06 54.3 68 44.1
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 9.8e-06 54.3 68 44.1


User provided reference genes

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