Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002197 Prasinoderma coloniale HOM05D004713 ORTHO05D005658 4.0e-122 441.4 218 100.0
MCO06G171 Micromonas commoda HOM05D004713 ORTHO05D005658 1.4e-63 246.9 206 59.7
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 3.6e-59 232.3 187 58.8
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 1.8e-58 229.9 227 53.7
Pp3c3_35180 Physcomitrium patens HOM05D004713 ORTHO05D005658 5.3e-58 228.4 196 57.7
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 9.0e-58 227.6 183 57.9
Cre11.g467689 Chlamydomonas reinhardtii HOM05D004713 ORTHO05D005658 1.5e-57 226.9 204 57.4
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 1.5e-57 226.9 186 57.5
Solyc12g005630.2 Solanum lycopersicum HOM05D004713 ORTHO05D005658 1.5e-57 226.9 186 58.6
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 1.5e-57 226.9 186 58.6
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 2.0e-57 226.5 185 58.4
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 3.4e-57 225.7 183 57.9
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 3.4e-57 225.7 183 57.9
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 3.4e-57 225.7 183 57.9
Mapoly0015s0074 Marchantia polymorpha HOM05D004713 ORTHO05D005658 4.5e-57 225.3 181 58.6
PGSC0003DMG400013751 Solanum tuberosum HOM05D004713 ORTHO05D005658 5.8e-57 224.9 186 58.6
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 9.9e-57 224.2 186 57.0
CBR_g52397 Chara braunii HOM05D004713 ORTHO05D005658 9.9e-57 224.2 203 55.2
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 9.9e-57 224.2 172 60.5
Pp3c8_1940 Physcomitrium patens HOM05D004713 ORTHO05D005658 1.7e-56 223.4 196 55.6
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 4.9e-56 221.9 187 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1073 Anthoceros agrestis HOM05D004713 ORTHO05D005658 6.4e-56 221.5 181 59.1
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 6.4e-56 221.5 184 57.1
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 8.4e-56 221.1 186 57.0
SMO358G0667 Selaginella moellendorffii HOM05D004713 ORTHO05D005658 8.4e-56 221.1 228 51.3
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 1.1e-55 220.7 187 56.1
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 1.4e-55 220.3 175 58.9
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 2.4e-55 219.5 183 55.7
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 2.4e-55 219.5 185 57.3
Zm00001eb204410 Zea mays HOM05D004713 ORTHO05D005658 2.4e-55 219.5 185 56.2
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 3.2e-55 219.2 190 56.3
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 4.2e-55 218.8 183 55.7
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 4.2e-55 218.8 185 56.2
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 5.5e-55 218.4 224 52.2
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 5.5e-55 218.4 184 56.0
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 5.5e-55 218.4 172 59.3
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 7.1e-55 218.0 183 55.2
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 7.1e-55 218.0 185 56.8
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 7.1e-55 218.0 185 56.2
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 9.3e-55 217.6 183 56.8
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 9.3e-55 217.6 185 56.8
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 9.3e-55 217.6 203 55.2
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 9.3e-55 217.6 183 57.4
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 9.3e-55 217.6 185 56.8
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 1.2e-54 217.2 185 56.2
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.2e-54 217.2 224 52.2
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 1.2e-54 217.2 184 54.9
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 2.1e-54 216.5 211 53.6
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 2.1e-54 216.5 183 56.3
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 2.7e-54 216.1 185 56.2
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 2.7e-54 216.1 192 55.7
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 2.7e-54 216.1 192 55.7
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 3.5e-54 215.7 186 54.3
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 4.6e-54 215.3 183 56.3
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 6.0e-54 214.9 182 56.6
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 6.0e-54 214.9 182 56.6
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 7.9e-54 214.5 183 55.7
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 7.9e-54 214.5 198 54.0
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 7.9e-54 214.5 198 54.0
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 7.9e-54 214.5 204 52.9
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 7.9e-54 214.5 218 50.9
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 7.9e-54 214.5 192 55.7
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.0e-53 214.2 182 56.6
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 1.0e-53 214.2 181 56.9
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 1.3e-53 213.8 172 58.7
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 1.3e-53 213.8 183 55.7
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 1.3e-53 213.8 183 55.7
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 1.3e-53 213.8 183 55.7
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 1.3e-53 213.8 183 55.7
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 1.3e-53 213.8 183 55.7
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 1.3e-53 213.8 231 50.2
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 1.3e-53 213.8 212 51.9
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 1.3e-53 213.8 184 56.0
Zm00001eb238370 Zea mays HOM05D004713 ORTHO05D005658 1.3e-53 213.8 202 53.0
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 1.8e-53 213.4 172 58.1
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 1.8e-53 213.4 183 55.7
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 2.3e-53 213.0 185 56.2
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 2.3e-53 213.0 182 56.0
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 2.3e-53 213.0 227 50.2
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 3.0e-53 212.6 192 55.2
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 3.0e-53 212.6 192 54.7
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 3.9e-53 212.2 183 54.6
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 3.9e-53 212.2 190 54.7
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 5.1e-53 211.8 183 54.6
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 5.1e-53 211.8 183 54.6
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 5.1e-53 211.8 228 51.8
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 5.1e-53 211.8 231 48.5
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 8.7e-53 211.1 183 54.6
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 1.1e-52 210.7 183 54.1
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 1.1e-52 210.7 183 54.1
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 1.1e-52 210.7 183 54.1
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 1.1e-52 210.7 183 54.1
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 1.1e-52 210.7 218 50.5
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 1.1e-52 210.7 186 55.4
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.5e-52 210.3 189 54.5
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 1.5e-52 210.3 183 54.1
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 1.5e-52 210.3 183 54.1
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 1.9e-52 209.9 183 54.1
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 1.9e-52 209.9 212 53.3
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 1.9e-52 209.9 170 57.6
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 2.5e-52 209.5 192 52.1
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 3.3e-52 209.1 186 55.9
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 4.3e-52 208.8 185 54.6
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 7.4e-52 208.0 193 53.4
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 7.4e-52 208.0 204 53.4
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 7.4e-52 208.0 167 57.5
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 9.6e-52 207.6 189 52.4
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 9.6e-52 207.6 221 49.8
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 9.6e-52 207.6 183 55.7
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 1.3e-51 207.2 201 52.7
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 1.6e-51 206.8 183 54.6
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 1.6e-51 206.8 230 48.3
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 2.1e-51 206.5 210 51.9
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 2.8e-51 206.1 186 53.8
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 2.8e-51 206.1 230 48.3
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 2.8e-51 206.1 184 53.3
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 3.7e-51 205.7 185 54.6
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 4.8e-51 205.3 195 51.8
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 4.8e-51 205.3 183 53.6
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 4.8e-51 205.3 212 51.4
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 8.1e-51 204.5 214 51.4
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 1.1e-50 204.1 207 51.2
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 1.4e-50 203.8 184 52.7
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 1.8e-50 203.4 183 54.6
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 5.3e-50 201.8 199 51.3
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 9.0e-50 201.1 226 48.7
Actinidia12471 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.5e-49 200.3 205 50.7
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 2.6e-49 199.5 186 53.8
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 3.4e-49 199.1 183 53.6
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 5.8e-49 198.4 224 48.7
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 5.8e-49 198.4 224 48.7
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 1.3e-48 197.2 185 54.1
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 1.3e-48 197.2 263 43.7
ECA236G1690 Erigeron canadensis HOM05D004713 ORTHO05D005658 1.7e-48 196.8 194 53.1
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.2e-48 196.4 217 47.0
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 4.9e-48 195.3 206 48.1
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 9.3e-47 191.0 172 55.8
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 3.5e-46 189.1 186 53.2
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 7.4e-44 181.4 150 56.7
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 9.6e-44 181.0 155 55.5
CDE01G0070 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 6.3e-43 178.3 183 49.2
Lsat_1_v5_gn_7_105940 Lactuca sativa HOM05D004713 ORTHO05D005658 6.3e-43 178.3 233 46.4
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 1.4e-42 177.2 154 53.9
HanXRQChr15g0494521 Helianthus annuus HOM05D004713 ORTHO05D005658 2.2e-40 169.9 220 45.9
Ca_01549_v3 Cicer arietinum L. HOM05D004713 ORTHO05D005658 8.7e-37 157.9 136 55.1
Aqoxy1G03926 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 1.0e-29 134.4 98 63.3
Oeu006770.1 Olea europaea HOM05D004713 ORTHO05D005658 9.1e-26 121.3 137 45.3
CDE12G0380 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 3.9e-21 105.9 102 52.0
unitig_699.g19605 Utricularia gibba HOM05D004713 ORTHO05D005658 3.2e-15 86.3 141 37.6
Actinidia25411 Actinidia chinensis HOM05D004713 ORTHO05D005658 2.1e-14 83.6 109 45.9
SMO271G0135 Selaginella moellendorffii HOM05D014246 ORTHO05D017314 2.6e-12 76.6 67 49.3
Pp3c16_12490 Physcomitrium patens HOM05D014246 ORTHO05D017314 1.8e-10 70.5 63 46.0
Cre12.g557350 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 3.1e-10 69.7 75 45.3
Pp3c5_14970 Physcomitrium patens HOM05D014246 ORTHO05D017314 5.3e-10 68.9 76 43.4
SEGI_20372 Sequoiadendron giganteum HOM05D014246 ORTHO05D017314 4.5e-09 65.9 56 42.9
AagrBONN_evm.TU.Sc2ySwM_369.133 Anthoceros agrestis HOM05D014246 ORTHO05D017314 1.7e-08 63.9 68 44.1
Cre13.g585750 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 2.9e-08 63.2 44 54.5
MD10G1189200 Malus domestica HOM05D004713 ORTHO05D005658 7.2e-07 58.5 47 61.7
MCO16G348 Micromonas commoda HOM05D002681 ORTHO05D003372 3.6e-06 56.2 55 49.1
Oeu027104.1 Olea europaea HOM05D002681 ORTHO05D000397 3.6e-06 56.2 81 38.3
Cfa023608 Carpinus fangiana HOM05D002681 ORTHO05D003372 4.7e-06 55.8 56 46.4
Haze_26739 Corylus avellana HOM05D002681 ORTHO05D003372 6.1e-06 55.5 43 55.8
RcHm_v2.0_Chr1g0330511 Rosa chinensis HOM05D004713 ORTHO05D005658 8.0e-06 55.1 93 38.7


User provided reference genes

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