Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 5.6e-253 877.1 433 100.0
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 3.7e-156 555.4 417 66.2
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 8.3e-156 554.3 416 66.1
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.4e-155 553.5 417 66.2
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 3.2e-155 552.4 416 66.8
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 5.4e-155 551.6 395 69.6
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 5.4e-155 551.6 430 65.8
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 5.4e-155 551.6 355 74.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 5.4e-155 551.6 423 66.0
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 5.4e-155 551.6 417 65.0
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 7.0e-155 551.2 423 66.0
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 7.0e-155 551.2 418 66.3
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 9.2e-155 550.8 418 66.3
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.6e-154 550.1 416 66.6
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.6e-154 550.1 395 68.9
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.6e-154 550.1 416 65.6
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 2.1e-154 549.7 421 65.1
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 2.1e-154 549.7 416 65.9
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 2.7e-154 549.3 416 67.1
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 2.7e-154 549.3 416 67.1
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 3.5e-154 548.9 416 66.1
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 3.5e-154 548.9 418 66.0
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 3.5e-154 548.9 416 65.9
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 4.6e-154 548.5 416 64.7
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 4.6e-154 548.5 424 64.4
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 4.6e-154 548.5 416 65.1
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 7.8e-154 547.7 412 64.6
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 7.8e-154 547.7 418 65.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.0e-153 547.4 394 68.0
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.3e-153 547.0 421 64.1
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.3e-153 547.0 423 65.2
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 1.7e-153 546.6 416 65.9
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 1.7e-153 546.6 427 64.9
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.7e-153 546.6 416 65.1
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 66.1
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 66.1
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 65.9
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 64.4
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 66.3
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 66.3
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 2.3e-153 546.2 416 65.6
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 3.0e-153 545.8 427 64.6
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 3.0e-153 545.8 422 64.2
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 5.1e-153 545.0 416 65.9
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 5.1e-153 545.0 416 65.9
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 5.1e-153 545.0 416 65.9
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 5.1e-153 545.0 416 65.9
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 5.1e-153 545.0 419 64.7
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 5.1e-153 545.0 416 65.4
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.1e-153 545.0 417 65.5
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 6.6e-153 544.7 416 65.9
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 6.6e-153 544.7 416 65.9
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 6.6e-153 544.7 416 65.9
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 6.6e-153 544.7 419 65.2
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 8.6e-153 544.3 416 64.9
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 8.6e-153 544.3 417 65.9
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 8.6e-153 544.3 418 65.3
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.1e-152 543.9 416 65.1
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.1e-152 543.9 417 63.8
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.1e-152 543.9 416 65.6
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.5e-152 543.5 423 65.0
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.9e-152 543.1 416 64.9
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.9e-152 543.1 416 65.9
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 2.5e-152 542.7 416 65.6
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 3.3e-152 542.3 416 64.9
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.3e-152 542.3 417 65.5
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 3.3e-152 542.3 416 65.6
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 3.3e-152 542.3 416 65.9
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 4.3e-152 542.0 416 64.7
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 5.6e-152 541.6 412 65.0
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 5.6e-152 541.6 423 63.6
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 5.6e-152 541.6 416 65.6
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 5.6e-152 541.6 416 64.4
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 5.6e-152 541.6 416 64.9
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.6e-152 541.6 416 64.7
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 7.3e-152 541.2 418 64.6
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 7.3e-152 541.2 416 64.4
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 7.3e-152 541.2 412 65.0
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 7.3e-152 541.2 423 63.6
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.2e-151 540.4 416 63.5
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.2e-151 540.4 416 64.9
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.2e-151 540.4 416 64.9
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.6e-151 540.0 419 64.4
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.6e-151 540.0 420 63.8
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.6e-151 540.0 394 66.8
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.6e-151 540.0 394 66.8
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.6e-151 540.0 394 67.0
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 1.6e-151 540.0 416 64.4
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.1e-151 539.7 412 65.5
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 2.1e-151 539.7 394 66.2
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 3.6e-151 538.9 416 63.7
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 3.6e-151 538.9 412 65.5
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 4.7e-151 538.5 418 63.9
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 4.7e-151 538.5 416 64.7
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 8.1e-151 537.7 418 63.9
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.1e-150 537.3 416 63.9
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.1e-150 537.3 416 64.2
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.1e-150 537.3 416 63.9
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.1e-150 537.3 394 66.8
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.8e-150 536.6 435 63.4
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.8e-150 536.6 416 64.7
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 2.3e-150 536.2 421 64.4
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.3e-150 536.2 416 63.5
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 3.1e-150 535.8 416 63.9
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 4.0e-150 535.4 416 64.4
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 4.0e-150 535.4 416 63.7
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 5.2e-150 535.0 419 64.0
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 5.2e-150 535.0 416 64.7
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.2e-149 533.9 417 64.3
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.2e-149 533.9 417 63.8
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 1.5e-149 533.5 414 64.7
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.5e-149 533.5 416 64.7
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.6e-149 532.7 419 63.7
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 3.4e-149 532.3 439 62.4
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 5.8e-149 531.6 394 66.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.7e-148 530.0 422 63.3
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.7e-148 528.9 425 63.1
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 4.9e-148 528.5 436 61.9
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 8.3e-148 527.7 425 63.1
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.4e-147 526.2 448 60.7
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 3.2e-147 525.8 417 63.3
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.2e-147 525.8 394 65.2
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 9.2e-147 524.2 418 61.7
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 9.2e-147 524.2 417 61.9
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 1.2e-146 523.9 457 59.7
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.2e-146 523.9 416 60.6
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 1.6e-146 523.5 444 60.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.5e-146 522.3 412 62.9
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.5e-146 522.3 412 62.4
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.8e-146 521.2 412 62.1
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.0e-145 520.8 412 62.4
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 5.1e-145 518.5 379 66.8
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 6.2e-143 511.5 380 65.3
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.1e-142 510.8 430 61.6
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.4e-142 510.4 418 63.2
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 4.0e-142 508.8 394 62.4
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 5.2e-142 508.4 390 63.3
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-141 506.9 390 63.1
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 9.9e-141 504.2 417 59.7
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 2.9e-140 502.7 412 60.9
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.9e-139 500.0 412 60.7
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.9e-139 500.0 418 59.1
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 9.2e-139 497.7 412 60.7
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.2e-138 497.3 416 58.2
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 2.7e-138 496.1 413 59.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 5.6e-136 488.4 433 59.4
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.1e-135 486.5 430 60.0
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 2.4e-134 483.0 426 56.8
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.1e-128 464.2 416 58.4
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.5e-128 463.8 357 65.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.3e-127 460.7 321 69.2
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.8e-126 456.8 350 65.7
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.2e-123 446.0 333 65.2
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.5e-120 436.4 416 55.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.2e-116 423.3 323 66.9
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 2.7e-106 389.8 301 63.5
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.2e-101 374.4 411 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 1.4e-99 367.5 281 66.2
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.8e-79 299.3 247 63.6
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.7e-71 273.1 184 69.0
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 6.3e-71 272.3 184 68.5
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 4.5e-69 266.2 247 54.7
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 7.2e-67 258.8 173 67.1
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.3e-65 253.8 181 70.7
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 7.0e-62 242.3 271 50.6
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 2.7e-53 213.8 322 38.2
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 2.3e-52 210.7 176 65.3
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 1.5e-51 208.0 224 50.4
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 3.7e-47 193.4 162 61.1
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.1e-43 181.8 145 64.1
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 1.8e-41 174.5 148 61.5
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.8e-40 169.5 383 33.2
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-33 148.3 154 53.9
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 3.3e-27 127.1 71 83.1
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 4.4e-24 116.7 91 63.7
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 2.3e-12 77.8 92 43.5
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 4.3e-11 73.6 74 51.4
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 4.8e-10 70.1 47 72.3
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 8.4e-07 59.3 139 38.1
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 5.5e-06 56.6 45 62.2


User provided reference genes

Program Settings