Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 0.0e+00 1914.4 1049 100.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.8e-69 267.7 605 36.0
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.6e-67 262.3 1020 29.9
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 6.2e-64 250.4 627 33.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 6.2e-64 250.4 672 34.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.4e-63 249.2 544 36.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 1.8e-63 248.8 690 33.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.8e-63 248.8 621 35.1
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.8e-63 248.8 631 35.3
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 3.1e-63 248.1 1064 29.3
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 3.1e-63 248.1 1065 29.4
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 4.0e-63 247.7 672 33.6
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.3e-63 247.3 624 34.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 6.9e-63 246.9 676 32.8
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 1.2e-62 246.1 975 29.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.5e-62 245.7 651 32.9
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.6e-62 245.0 666 32.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 7.6e-62 243.4 1062 29.8
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 9.9e-62 243.0 601 33.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.3e-61 242.7 631 34.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 1.7e-61 242.3 675 33.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.9e-61 241.5 649 33.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 2.9e-61 241.5 631 34.1
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 3.8e-61 241.1 631 34.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 4.9e-61 240.7 721 34.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 4.9e-61 240.7 701 33.2
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 1.1e-60 239.6 652 33.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 3.2e-60 238.0 1082 29.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 3.2e-60 238.0 960 29.2
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.5e-60 237.3 1048 28.3
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 7.1e-60 236.9 683 32.1
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.1e-60 236.9 594 33.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 9.3e-60 236.5 636 32.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 9.3e-60 236.5 634 33.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.2e-59 236.1 1006 28.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.2e-59 236.1 681 32.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.6e-59 235.7 1002 29.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.1e-59 235.3 633 32.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.7e-59 235.0 650 32.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 4.6e-59 234.2 971 28.3
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 4.6e-59 234.2 664 33.6
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 4.6e-59 234.2 992 29.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 6.0e-59 233.8 1053 28.8
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 7.9e-59 233.4 639 34.0
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.0e-58 233.0 1002 28.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 1.0e-58 233.0 703 31.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 1.3e-58 232.6 1010 29.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.8e-58 232.3 629 33.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 1.8e-58 232.3 944 28.9
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 2.3e-58 231.9 944 28.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 2.3e-58 231.9 653 33.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 2.3e-58 231.9 617 33.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 2.3e-58 231.9 623 31.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 2.3e-58 231.9 966 28.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 3.0e-58 231.5 620 33.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 3.9e-58 231.1 979 29.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 5.1e-58 230.7 1044 29.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 6.7e-58 230.3 723 32.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 6.7e-58 230.3 628 33.6
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 8.7e-58 229.9 983 28.0
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.1e-57 229.6 674 32.3
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.1e-57 229.6 1023 28.7
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 3.3e-57 228.0 1035 28.2
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 4.3e-57 227.6 654 32.9
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 4.3e-57 227.6 1030 28.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.3e-57 227.6 1002 27.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 5.6e-57 227.3 655 33.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 5.6e-57 227.3 966 28.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 7.4e-57 226.9 980 28.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 9.6e-57 226.5 625 33.0
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 9.6e-57 226.5 983 28.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 1.6e-56 225.7 1090 28.3
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 3.7e-56 224.6 1034 27.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 3.7e-56 224.6 966 28.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 4.8e-56 224.2 1056 28.1
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 6.2e-56 223.8 623 31.9
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 8.2e-56 223.4 1024 28.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-55 223.0 623 31.9
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-55 223.0 983 29.0
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 1.1e-55 223.0 975 28.4
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 1.1e-55 223.0 1078 28.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 1.1e-55 223.0 1078 28.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-55 222.6 983 28.7
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 1.8e-55 222.2 1043 28.1
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 2.4e-55 221.9 959 29.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 3.1e-55 221.5 995 29.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 3.1e-55 221.5 1014 29.2
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 4.0e-55 221.1 983 28.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.0e-55 221.1 984 29.4
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 4.0e-55 221.1 959 29.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.3e-55 220.7 1053 27.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.3e-55 220.7 1053 27.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 5.3e-55 220.7 964 28.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 6.9e-55 220.3 1050 27.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 6.9e-55 220.3 1088 28.3
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 9.0e-55 219.9 633 32.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.0e-55 219.9 983 29.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 1.2e-54 219.5 984 28.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 1.2e-54 219.5 964 28.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 2.0e-54 218.8 956 29.3
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 2.0e-54 218.8 1094 28.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.0e-54 218.8 1046 27.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 2.0e-54 218.8 1006 28.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 2.0e-54 218.8 1001 27.6
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.6e-54 218.4 1051 27.3
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.8e-54 217.2 1024 28.1
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.8e-54 217.2 1040 27.9
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 7.6e-54 216.9 675 30.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 7.6e-54 216.9 1040 28.0
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 1.0e-53 216.5 1059 27.2
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.7e-53 215.7 641 31.4
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.7e-53 215.7 1054 26.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.2e-53 215.3 984 29.1
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 2.2e-53 215.3 1031 28.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.8e-53 214.5 968 28.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.8e-53 214.5 1034 28.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.9e-53 214.2 1051 27.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.4e-52 212.6 968 29.1
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 1.4e-52 212.6 1022 27.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 1.9e-52 212.2 689 30.8
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.9e-52 212.2 667 32.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.9e-52 212.2 667 32.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 4.2e-52 211.1 1042 27.8
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 7.1e-52 210.3 1052 27.5
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 7.9e-51 206.8 975 28.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.9e-51 206.8 649 32.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 7.9e-51 206.8 659 31.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 7.9e-51 206.8 1053 26.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 1.3e-50 206.1 960 28.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.8e-50 205.7 1044 27.0
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 3.0e-50 204.9 1058 26.8
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 3.9e-50 204.5 971 28.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 8.7e-50 203.4 1047 28.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 8.7e-50 203.4 1017 28.4
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 1.1e-49 203.0 946 29.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 7.4e-49 200.3 970 27.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.2e-48 198.7 519 33.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 4.8e-48 197.6 1046 27.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-46 192.6 648 30.6
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 8.5e-45 186.8 584 31.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.9e-42 177.9 302 42.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 5.1e-42 177.6 945 27.0
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 5.1e-42 177.6 602 28.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-41 176.4 627 30.3
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 3.3e-41 174.9 914 26.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 5.7e-41 174.1 542 29.9
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 7.7e-38 163.7 369 36.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-37 162.5 308 39.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.2e-37 162.2 817 26.8
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.2e-36 157.1 611 28.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.7e-35 155.2 602 30.6
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-32 146.0 274 37.6
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.6e-30 138.7 285 36.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 5.9e-30 137.5 600 28.0
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.8e-29 134.8 626 28.8
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.9e-28 132.5 234 38.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-28 131.3 131 48.9
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.7e-25 120.9 662 26.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.7e-25 120.9 270 31.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.9e-22 110.9 456 28.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.9e-21 108.6 599 25.4
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 6.5e-21 107.5 231 34.2


User provided reference genes

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