Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 4.2e-289 997.3 491 100.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 9.4e-55 218.8 435 37.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.6e-54 218.0 384 38.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.7e-54 216.5 437 35.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.0e-54 215.7 478 33.3
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.3e-53 214.2 447 35.8
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 6.3e-51 206.1 416 34.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 6.3e-51 206.1 392 36.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.4e-50 204.9 475 32.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.4e-50 204.9 369 36.9
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-50 204.5 407 34.4
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-50 204.5 407 34.4
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-50 204.5 407 34.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.1e-50 203.8 430 34.0
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.1e-50 203.4 432 35.6
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-49 201.8 486 32.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.2e-49 201.8 411 34.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-49 201.4 460 33.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 3.5e-49 200.3 424 33.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.5e-49 200.3 398 34.9
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.5e-49 199.9 411 33.1
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.9e-49 199.5 422 33.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 7.7e-49 199.1 440 33.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.0e-48 198.7 438 33.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.0e-48 198.7 465 34.0
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-48 198.4 422 34.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.3e-48 198.4 456 34.0
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.7e-48 198.0 447 32.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.7e-48 198.0 377 35.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.2e-48 197.6 438 33.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.9e-48 197.2 455 33.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.8e-48 196.8 377 34.5
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.5e-48 196.1 405 33.6
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 6.5e-48 196.1 458 33.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 8.5e-48 195.7 453 33.1
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 8.5e-48 195.7 442 34.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.1e-47 195.3 432 33.8
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-47 194.5 455 33.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.9e-47 194.5 419 33.9
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.9e-47 194.5 450 33.6
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.9e-47 194.5 476 32.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.9e-47 194.5 421 35.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.5e-47 194.1 437 33.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.5e-47 194.1 373 35.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.5e-47 194.1 441 32.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-47 193.7 456 33.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.2e-47 193.7 500 30.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 4.2e-47 193.4 456 33.3
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 4.2e-47 193.4 456 33.3
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.2e-47 193.4 386 34.5
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.2e-47 193.4 485 31.1
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.5e-47 193.0 403 33.3
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-47 193.0 458 32.3
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-47 193.0 405 33.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 5.5e-47 193.0 405 33.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.5e-47 193.0 378 35.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.5e-47 193.0 449 33.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 7.2e-47 192.6 483 32.5
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.4e-47 192.2 460 33.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 9.4e-47 192.2 472 32.8
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 9.4e-47 192.2 431 33.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 9.4e-47 192.2 500 30.8
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-46 191.8 448 33.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.6e-46 191.4 479 33.4
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.6e-46 191.4 457 33.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.1e-46 191.0 392 34.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-46 191.0 428 33.9
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-46 191.0 423 34.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.1e-46 191.0 472 32.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.1e-46 191.0 462 31.8
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.1e-46 191.0 477 32.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.1e-46 191.0 466 33.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-46 190.7 416 32.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-46 190.7 416 32.9
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.7e-46 190.7 476 31.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.6e-46 190.3 433 33.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.6e-46 190.3 457 33.3
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.7e-46 189.9 414 33.8
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.7e-46 189.9 446 32.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.7e-46 189.9 471 32.3
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.7e-46 189.9 475 32.0
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.7e-46 189.9 455 31.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.7e-46 189.9 480 32.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 6.1e-46 189.5 475 30.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.1e-46 189.5 485 32.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 6.1e-46 189.5 507 32.1
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.1e-46 189.5 452 32.3
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 8.0e-46 189.1 485 33.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.0e-45 188.7 455 32.5
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.4e-45 188.3 455 33.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.4e-45 188.3 470 32.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.4e-45 188.3 432 31.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.3e-45 187.6 450 33.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.3e-45 187.6 436 32.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.0e-45 187.2 421 34.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.0e-45 187.2 446 32.5
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.0e-45 187.2 455 33.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.0e-45 187.2 424 34.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 3.0e-45 187.2 468 32.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.0e-45 186.8 440 32.7
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.0e-45 186.8 434 33.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.2e-45 186.4 502 31.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.8e-45 186.0 492 30.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-45 186.0 454 32.6
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.8e-45 185.7 440 32.7
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.8e-45 185.7 446 32.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.2e-44 185.3 474 32.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-44 185.3 482 31.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.2e-44 185.3 495 31.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-44 184.5 425 32.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.0e-44 184.5 496 30.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.6e-44 184.1 462 33.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.6e-44 184.1 483 32.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.4e-44 183.7 413 31.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.4e-44 183.7 370 33.8
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.4e-44 183.3 462 32.7
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.7e-44 183.0 456 32.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 7.5e-44 182.6 467 30.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 7.5e-44 182.6 449 32.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.5e-44 182.6 407 31.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.5e-44 182.6 450 32.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 9.8e-44 182.2 451 31.5
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.7e-43 180.3 457 31.3
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.7e-43 180.3 355 34.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.8e-43 179.9 467 32.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.3e-43 179.1 463 31.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-42 178.7 430 32.1
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-42 177.6 503 30.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.1e-42 176.8 438 30.8
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.1e-42 175.6 465 30.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-41 175.3 423 32.4
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.6e-41 174.9 366 32.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.9e-40 170.6 501 28.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.9e-39 167.9 437 30.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.5e-39 166.4 430 31.2
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.6e-38 164.9 479 29.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.7e-38 164.1 373 33.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.0e-37 162.2 352 35.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.5e-36 158.3 352 34.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.4e-36 157.1 350 34.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.7e-36 156.4 421 31.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.9e-35 153.3 356 34.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 4.9e-35 153.3 369 33.9
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.3e-35 152.9 385 31.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.0e-32 145.6 294 32.7
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.0e-32 145.6 365 31.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.6e-30 137.1 242 37.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.7e-30 136.7 491 29.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.4e-28 130.2 659 27.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.7e-28 129.8 337 32.3
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.9e-27 127.5 601 25.1
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.3e-23 114.0 285 30.9
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.5e-23 112.5 245 34.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-20 104.8 230 31.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-18 96.3 302 31.5
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.8e-14 84.3 196 31.6
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.1e-13 82.4 224 30.8
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.8e-13 79.7 207 30.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-12 79.0 208 30.8
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.4e-12 77.0 303 25.4
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.1e-09 68.2 176 30.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-07 62.4 117 40.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-06 58.2 83 38.6


User provided reference genes

Program Settings