Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.1e-112 410.2 240 100.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 3.2e-16 89.7 124 46.0
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 9.4e-16 88.2 135 40.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.2e-15 87.8 115 41.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.7e-15 86.7 110 42.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.6e-15 86.3 113 45.1
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.0e-14 84.7 112 42.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.4e-14 84.3 113 43.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.4e-14 84.3 101 43.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.8e-14 84.0 113 46.0
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.8e-14 84.0 101 44.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.3e-14 83.6 115 44.3
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.0e-14 83.2 106 44.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 3.0e-14 83.2 104 41.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 3.9e-14 82.8 113 43.4
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 5.1e-14 82.4 115 41.7
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 6.7e-14 82.0 112 38.4
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.7e-14 82.0 88 47.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 6.7e-14 82.0 115 41.7
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 6.7e-14 82.0 101 42.6
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.7e-14 82.0 113 45.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 8.8e-14 81.6 99 43.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 8.8e-14 81.6 115 41.7
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.8e-14 81.6 101 42.6
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.1e-13 81.3 112 43.8
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-13 81.3 88 47.7
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-13 81.3 88 47.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.1e-13 81.3 88 47.7
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.1e-13 81.3 113 42.5
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.5e-13 80.9 115 41.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-13 80.9 88 47.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.5e-13 80.9 113 41.6
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-13 80.5 88 47.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.0e-13 80.5 108 44.4
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.6e-13 80.1 113 41.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.6e-13 80.1 88 47.7
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.6e-13 80.1 115 40.9
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.6e-13 80.1 90 44.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.6e-13 80.1 88 46.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 3.3e-13 79.7 113 41.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.3e-13 79.7 113 41.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 3.3e-13 79.7 138 38.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 3.3e-13 79.7 88 45.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 3.3e-13 79.7 112 42.0
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.3e-13 79.7 113 44.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.4e-13 79.3 88 47.7
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 4.4e-13 79.3 102 44.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.4e-13 79.3 108 45.4
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 4.4e-13 79.3 101 41.6
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.7e-13 79.0 101 42.6
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.7e-13 79.0 88 46.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 5.7e-13 79.0 115 40.9
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.7e-13 79.0 101 41.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.7e-13 79.0 101 41.6
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 5.7e-13 79.0 101 41.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 7.4e-13 78.6 113 42.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.4e-13 78.6 113 41.6
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.4e-13 78.6 113 41.6
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 7.4e-13 78.6 113 41.6
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 7.4e-13 78.6 107 43.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 7.4e-13 78.6 115 41.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 9.7e-13 78.2 88 45.5
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 9.7e-13 78.2 101 42.6
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 9.7e-13 78.2 113 42.5
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 9.7e-13 78.2 113 43.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 9.7e-13 78.2 111 42.3
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 9.7e-13 78.2 113 41.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.3e-12 77.8 113 41.6
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.3e-12 77.8 113 39.8
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-12 77.8 101 39.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-12 77.8 101 39.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.3e-12 77.8 101 40.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.7e-12 77.4 113 40.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.7e-12 77.4 88 46.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.7e-12 77.4 87 47.1
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.2e-12 77.0 113 42.5
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.8e-12 76.6 113 41.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 2.8e-12 76.6 113 41.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.8e-12 76.6 108 43.5
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 2.8e-12 76.6 113 39.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.8e-12 76.6 113 40.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 3.7e-12 76.3 99 40.4
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 3.7e-12 76.3 115 40.9
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 4.8e-12 75.9 88 43.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.8e-12 75.9 88 43.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 4.8e-12 75.9 88 43.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-12 75.9 93 43.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.8e-12 75.9 99 40.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.8e-12 75.9 108 42.6
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 4.8e-12 75.9 90 41.1
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.8e-12 75.9 88 43.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.8e-12 75.9 87 44.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.8e-12 75.9 101 40.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 6.3e-12 75.5 113 41.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 6.3e-12 75.5 90 41.1
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 6.3e-12 75.5 243 32.5
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 6.3e-12 75.5 88 43.2
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 8.2e-12 75.1 88 44.3
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 8.2e-12 75.1 113 38.9
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 8.2e-12 75.1 114 39.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 8.2e-12 75.1 114 39.5
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 8.2e-12 75.1 88 43.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-11 74.7 113 38.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.1e-11 74.7 99 39.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.1e-11 74.7 99 39.4
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.1e-11 74.7 88 46.6
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.1e-11 74.7 88 42.0
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.1e-11 74.7 83 45.8
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.4e-11 74.3 99 39.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.4e-11 74.3 94 43.6
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.4e-11 74.3 101 39.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-11 74.3 101 39.6
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-11 74.3 101 39.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.4e-11 74.3 88 43.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.8e-11 73.9 88 42.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.8e-11 73.9 83 47.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.8e-11 73.9 88 42.0
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.1e-11 73.2 83 43.4
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.1e-11 73.2 90 40.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 9.1e-11 71.6 93 41.9
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.2e-10 71.2 88 39.8
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.0e-10 70.5 102 37.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.6e-10 70.1 88 37.5
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.5e-10 69.3 79 48.1
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.7e-09 67.4 90 37.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.7e-09 67.4 91 36.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-09 67.0 90 40.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-09 67.0 90 40.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.9e-09 66.6 88 37.5
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 8.5e-09 65.1 85 40.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 5.5e-08 62.4 109 35.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 9.4e-08 61.6 88 35.2
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.7e-07 60.1 85 37.6
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.7e-07 60.1 95 34.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-07 59.7 170 27.6
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-07 59.7 93 38.7
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 8.0e-07 58.5 88 39.8
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 8.0e-07 58.5 88 39.8
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 8.8e-06 55.1 91 39.6


User provided reference genes

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