Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001301 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 0.0e+00 3196.8 1693 100.0
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 3.2e-227 793.5 1413 37.6
MCO16G469 Micromonas commoda HOM05D009333 ORTHO05D011489 1.8e-214 751.1 1528 35.5
PRCOL_00002631 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 3.6e-178 630.6 1656 30.6
MCO04G064 Micromonas commoda HOM05D009333 ORTHO05D011489 1.0e-169 602.4 1426 31.6
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 6.4e-143 513.5 1451 30.3
MCO14G141 Micromonas commoda HOM05D009333 ORTHO05D011489 4.3e-139 500.7 1809 26.4
Cre16.g665050 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 5.6e-131 473.8 1934 25.9
Cre17.g720600 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.3e-124 452.6 1606 28.3
MCO13G580 Micromonas commoda HOM05D009333 ORTHO05D011489 2.4e-118 431.8 1545 26.7
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 7.4e-91 340.5 584 38.0
Cre11.g467528 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 9.0e-89 333.6 720 32.2
Cre17.g702850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 3.2e-86 325.1 721 33.4
Cre16.g665100 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 4.6e-85 321.2 2167 21.9
Cre16.g667350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.3e-84 318.9 652 34.4
PRCOL_00001059 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 8.7e-84 317.0 1538 23.8
Cre10.g444850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.1e-78 300.1 659 32.9
Cre07.g333535 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 8.2e-74 283.9 670 30.4
MCO16G144 Micromonas commoda HOM05D009333 ORTHO05D011489 3.8e-71 275.0 1454 25.4
MCO04G501 Micromonas commoda HOM05D009333 ORTHO05D011489 9.4e-70 270.4 1588 24.1
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.8e-66 258.8 651 29.5
Cfa026594 Carpinus fangiana HOM05D009333 ORTHO05D011489 7.7e-56 224.2 1413 22.6
Mapoly0069s0001 Marchantia polymorpha HOM05D009333 ORTHO05D011489 1.5e-46 193.4 739 26.0
Mapoly0016s0197 Marchantia polymorpha HOM05D009333 ORTHO05D011489 1.8e-41 176.4 1559 20.4
AagrBONN_evm.TU.Sc2ySwM_368.2114 Anthoceros agrestis HOM05D009333 ORTHO05D011489 4.1e-41 175.3 480 28.8
Pp3c26_6020 Physcomitrium patens HOM05D009333 ORTHO05D011489 1.1e-30 140.6 402 26.6
Cre16.g667451 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 5.0e-23 115.2 280 31.4
CBR_g29491 Chara braunii HOM05D009333 ORTHO05D011489 6.0e-16 91.7 262 28.6
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 3.0e-15 89.4 293 29.4
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 1.1e-14 87.4 271 28.4
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 4.3e-14 85.5 290 28.3
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 7.3e-14 84.7 303 27.1
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.2e-13 84.0 277 27.4
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 1.2e-13 84.0 297 27.3
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 3.6e-13 82.4 265 29.4
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 4.7e-13 82.0 279 28.0
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 6.2e-13 81.6 265 28.7
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 8.1e-13 81.3 471 23.8
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.0e-12 79.0 340 26.8
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 5.2e-12 78.6 289 27.7
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 5.2e-12 78.6 312 26.3
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 6.8e-12 78.2 261 28.4
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 8.9e-12 77.8 277 26.4
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.5e-11 77.0 264 28.0
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 2.0e-11 76.6 271 26.2
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 2.0e-11 76.6 295 26.4
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.6e-11 76.3 300 26.7
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.6e-11 76.3 224 31.2
CBR_g19278 Chara braunii HOM05D009333 ORTHO05D011489 7.6e-11 74.7 225 30.2
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 9.9e-11 74.3 295 28.1
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 9.9e-11 74.3 261 26.8
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 9.9e-11 74.3 333 24.0
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.3e-10 73.9 263 27.8
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.2e-10 73.2 283 26.1
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.8e-10 72.4 288 24.7
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.8e-10 72.4 307 26.4
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.9e-10 72.0 288 24.7
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 4.9e-10 72.0 287 25.4
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 4.9e-10 72.0 284 28.5
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 4.9e-10 72.0 264 27.3
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 8.4e-10 71.2 269 25.7
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 8.4e-10 71.2 264 27.3
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.4e-10 71.2 335 25.1
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.4e-09 70.5 317 26.2
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 1.4e-09 70.5 261 26.8
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.9e-09 70.1 220 27.7
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.9e-09 70.1 338 25.4
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.9e-09 70.1 279 26.2
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 2.4e-09 69.7 268 26.9
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.4e-09 69.7 333 25.2
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 4.1e-09 68.9 264 26.5
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 5.4e-09 68.6 288 25.0
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 7.1e-09 68.2 314 26.8
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 7.1e-09 68.2 269 26.8
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 9.2e-09 67.8 291 25.1
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 9.2e-09 67.8 274 24.8
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 1.2e-08 67.4 318 25.5
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.2e-08 67.4 272 25.0
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.2e-08 67.4 284 25.7
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.6e-08 67.0 270 26.7
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.6e-08 67.0 269 26.8
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.1e-08 66.6 235 28.5
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 2.1e-08 66.6 310 25.2
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 2.7e-08 66.2 278 25.2
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 4.6e-08 65.5 279 25.8
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 6.0e-08 65.1 271 28.0
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 6.0e-08 65.1 174 29.3
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 6.0e-08 65.1 296 26.7
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.8e-08 64.7 294 27.6
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.3e-07 63.9 164 29.3
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.7e-07 63.5 384 22.4
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 2.3e-07 63.2 236 25.8
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 2.3e-07 63.2 163 29.4
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 6.6e-07 61.6 452 24.3
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.7e-07 61.2 301 25.2
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.7e-07 61.2 301 25.2
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.5e-06 60.5 289 24.6
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.3e-06 58.9 285 24.6
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 5.6e-06 58.5 298 23.8
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 7.3e-06 58.2 161 28.0
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 7.3e-06 58.2 285 26.3


User provided reference genes

Program Settings