Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000861 Prasinoderma coloniale HOM05D000001 ORTHO05D002182 6.2e-233 810.4 417 100.0
Lj6g0021423 Lotus japonicus HOM05D000001 ORTHO05D002182 8.7e-09 65.9 111 36.0
Dinv21493 Davidia involucrata HOM05D000001 ORTHO05D002182 1.1e-08 65.5 102 36.3
Eucgr.D00242 Eucalyptus grandis HOM05D000001 ORTHO05D002182 1.9e-08 64.7 125 34.4
QL09p040907 Quercus lobata HOM05D000001 ORTHO05D002182 3.3e-08 63.9 103 34.0
vmacro03421 Vaccinium macrocarpon HOM05D000001 ORTHO05D002182 3.3e-08 63.9 102 34.3
PRCOL_00002275 Prasinoderma coloniale HOM05D000001 ORTHO05D002182 5.6e-08 63.2 55 45.5
TPR.G26230 Trifolium pratense HOM05D000001 ORTHO05D002182 5.6e-08 63.2 111 34.2
arahy.Tifrunner.gnm1.ann1.CR4GUX Arachis hypogaea HOM05D000001 ORTHO05D002182 7.3e-08 62.8 71 42.3
arahy.Tifrunner.gnm1.ann1.PL2FJ9 Arachis hypogaea HOM05D000001 ORTHO05D002182 7.3e-08 62.8 71 42.3
CANSAT35G0468 Cannabis sativa HOM05D000001 ORTHO05D002182 7.3e-08 62.8 138 31.9
PGSC0003DMG400005381 Solanum tuberosum HOM05D000001 ORTHO05D002182 7.3e-08 62.8 102 33.3
Psat1g191360 Pisum sativum HOM05D000001 ORTHO05D002182 9.6e-08 62.4 111 35.1
Rhsim13G0118700 Rhododendron simsii HOM05D000001 ORTHO05D002182 9.6e-08 62.4 102 34.3
CAN.G36.29 Capsicum annuum HOM05D000001 ORTHO05D002182 1.2e-07 62.0 102 33.3
Medtr2g018880 Medicago truncatula HOM05D000001 ORTHO05D002182 1.2e-07 62.0 71 42.3
Sopen08g008190 Solanum pennellii HOM05D000001 ORTHO05D002182 1.2e-07 62.0 102 33.3
CSS0005660 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 1.6e-07 61.6 102 33.3
CSS0040764 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 1.6e-07 61.6 102 33.3
Nn4g26648 Nelumbo nucifera HOM05D000001 ORTHO05D002182 1.6e-07 61.6 102 35.3
Oeu041164.2 Olea europaea HOM05D000001 ORTHO05D002182 1.6e-07 61.6 103 35.9
Ciclev10014038m.g Citrus clementina HOM05D000001 ORTHO05D002182 2.1e-07 61.2 102 33.3
CsaV3_6G052190 Cucumis sativus L. HOM05D000001 ORTHO05D002182 2.1e-07 61.2 56 46.4
ECA238G2247 Erigeron canadensis HOM05D000001 ORTHO05D002182 2.1e-07 61.2 103 32.0
Cfa000874 Carpinus fangiana HOM05D000001 ORTHO05D002182 2.8e-07 60.8 102 34.3
Atru.chr5.1799 Acer truncatum HOM05D000001 ORTHO05D002182 3.6e-07 60.5 56 44.6
CDE06G2199 Ceratophyllum demersum HOM05D000001 ORTHO05D002182 3.6e-07 60.5 88 37.5
Ca_00519_v3 Cicer arietinum L. HOM05D000001 ORTHO05D002182 3.6e-07 60.5 111 36.9
ECA238G4240 Erigeron canadensis HOM05D000001 ORTHO05D002182 3.6e-07 60.5 102 34.3
Glyma.15G092000 Glycine max HOM05D000001 ORTHO05D002182 3.6e-07 60.5 71 40.8
Lj1A72T50 Lonicera japonica HOM05D000001 ORTHO05D002182 3.6e-07 60.5 102 36.3
Oeu058467.1 Olea europaea HOM05D000001 ORTHO05D002182 3.6e-07 60.5 102 36.3
SGA_v2.0_scaffold138G35197 Striga asiatica HOM05D000001 ORTHO05D002182 3.6e-07 60.5 103 36.9
ClCG01G025010 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.7e-07 60.1 102 32.4
Manes.17G074900 Manihot esculenta HOM05D000001 ORTHO05D002182 4.7e-07 60.1 102 33.3
QL05p054340 Quercus lobata HOM05D000001 ORTHO05D002182 4.7e-07 60.1 102 35.3
Sabra16G0235800 Salix brachista HOM05D000001 ORTHO05D002182 4.7e-07 60.1 102 35.3
Haze_05716 Corylus avellana HOM05D000001 ORTHO05D002182 6.2e-07 59.7 102 35.3
ECA236G0529 Erigeron canadensis HOM05D000001 ORTHO05D002182 6.2e-07 59.7 59 45.8
Nitab4.5_0000315g0170 Nicotiana tabacum HOM05D000001 ORTHO05D002182 6.2e-07 59.7 102 31.4
Nitab4.5_0003295g0150 Nicotiana tabacum HOM05D000001 ORTHO05D002182 6.2e-07 59.7 118 31.4
VMungo0540G0145 Vigna mungo HOM05D000413 ORTHO05D002182 6.2e-07 59.7 64 43.8
Potri.001G358100 Populus trichocarpa HOM05D000001 ORTHO05D002182 8.1e-07 59.3 103 35.0
TAR627G0492 Trochodendron aralioides HOM05D000001 ORTHO05D002182 8.1e-07 59.3 103 34.0
Medtr7g098170 Medicago truncatula HOM05D000001 ORTHO05D002182 1.1e-06 58.9 126 33.3
Phvul.006G167200 Phaseolus vulgaris HOM05D000001 ORTHO05D002182 1.1e-06 58.9 64 42.2
Hma1.2p1_0689F.1_g203770 Hydrangea macrophylla HOM05D000001 ORTHO05D002182 1.4e-06 58.5 102 35.3
Lj1g0010012 Lotus japonicus HOM05D000001 ORTHO05D002182 1.4e-06 58.5 126 33.3
Peaxi162Scf00415g00517 Petunia axillaris HOM05D000001 ORTHO05D002182 1.4e-06 58.5 118 32.2
MELO3C007093.2 Cucumis melo HOM05D000001 ORTHO05D002182 1.8e-06 58.2 102 31.4
Gorai.002G141900 Gossypium raimondii HOM05D000001 ORTHO05D002182 1.8e-06 58.2 61 42.6
Actinidia23089 Actinidia chinensis HOM05D000001 ORTHO05D002182 2.4e-06 57.8 102 36.3
ATR0736G050 Amborella trichopoda HOM05D000001 ORTHO05D002182 2.4e-06 57.8 104 34.6
ATR1098G120 Amborella trichopoda HOM05D000001 ORTHO05D002182 2.4e-06 57.8 102 31.4
Aqoxy4G00106 Aquilegia oxysepala HOM05D000001 ORTHO05D002182 2.4e-06 57.8 56 48.2
HanXRQChr04g0112101 Helianthus annuus HOM05D000001 ORTHO05D002182 2.4e-06 57.8 56 46.4
Lj1C1167T9 Lonicera japonica HOM05D000001 ORTHO05D002182 2.4e-06 57.8 102 37.3
Lj1C72G5 Lonicera japonica HOM05D000001 ORTHO05D002182 2.4e-06 57.8 65 43.1
MD10G1256100 Malus domestica HOM05D000001 ORTHO05D002182 2.4e-06 57.8 102 36.3
Nitab4.5_0008802g0010 Nicotiana tabacum HOM05D000001 ORTHO05D002182 2.4e-06 57.8 102 31.4
Os05g0486600 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D002182 2.4e-06 57.8 60 43.3
Glyma.13G220400 Glycine max HOM05D000001 ORTHO05D002182 3.1e-06 57.4 111 35.1
Nn1g02904 Nelumbo nucifera HOM05D000001 ORTHO05D002182 3.1e-06 57.4 109 33.0
Nitab4.5_0002389g0080 Nicotiana tabacum HOM05D000001 ORTHO05D002182 3.1e-06 57.4 119 30.3
PGR083G2164 Punica granatum HOM05D000001 ORTHO05D002182 3.1e-06 57.4 125 32.0
Ah.15g092700 Amaranthus hybridus HOM05D000001 ORTHO05D002182 4.0e-06 57.0 56 46.4
CBR_g48844 Chara braunii HOM05D000001 ORTHO05D002182 4.0e-06 57.0 137 28.5
Ciclev10019112m.g Citrus clementina HOM05D000001 ORTHO05D002182 4.0e-06 57.0 133 32.3
Lalb_Chr01g0019561 Lupinus albus HOM05D000001 ORTHO05D002182 4.0e-06 57.0 125 32.0
TAR362G1208 Trochodendron aralioides HOM05D000001 ORTHO05D002182 4.0e-06 57.0 109 32.1
AUR62002658 Chenopodium quinoa HOM05D000001 ORTHO05D002182 5.2e-06 56.6 56 44.6
MD05G1060000 Malus domestica HOM05D000001 ORTHO05D002182 5.2e-06 56.6 56 44.6
Peaxi162Scf00045g00234 Petunia axillaris HOM05D000001 ORTHO05D002182 5.2e-06 56.6 104 34.6
SGA_v2.0_scaffold1G00225 Striga asiatica HOM05D000001 ORTHO05D002182 5.2e-06 56.6 110 31.8
Ah.14g086270 Amaranthus hybridus HOM05D000001 ORTHO05D002182 6.9e-06 56.2 56 42.9
AL1G13630 Arabidopsis lyrata HOM05D000001 ORTHO05D002182 6.9e-06 56.2 64 39.1
AT1G04020 Arabidopsis thaliana HOM05D000001 ORTHO05D002182 6.9e-06 56.2 64 39.1
BraA01t01189Z Brassica rapa HOM05D000001 ORTHO05D000003 6.9e-06 56.2 136 30.1
AUR62008777 Chenopodium quinoa HOM05D000001 ORTHO05D002182 6.9e-06 56.2 65 38.5
AUR62025461 Chenopodium quinoa HOM05D000001 ORTHO05D002182 6.9e-06 56.2 65 38.5
HanXRQChr12g0385601 Helianthus annuus HOM05D000001 ORTHO05D002182 6.9e-06 56.2 102 30.4
TWI53G1691 Tripterygium wilfordii HOM05D000001 ORTHO05D002182 6.9e-06 56.2 102 31.4
arahy.Tifrunner.gnm1.ann1.0MSU5M Arachis hypogaea HOM05D000001 ORTHO05D002182 9.0e-06 55.8 103 37.9
CAN.G941.4 Capsicum annuum HOM05D000001 ORTHO05D002182 9.0e-06 55.8 53 47.2
CiPaw.09G117800 Carya illinoinensis HOM05D000001 ORTHO05D002182 9.0e-06 55.8 112 36.6
Lalb_Chr18g0055211 Lupinus albus HOM05D000001 ORTHO05D002182 9.0e-06 55.8 109 36.7
MD05G1192200 Malus domestica HOM05D000001 ORTHO05D002182 9.0e-06 55.8 79 38.0
Os04g0512400 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D002182 9.0e-06 55.8 56 46.4


User provided reference genes

Program Settings