Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000790 Prasinoderma coloniale HOM05D005257 ORTHO05D006425 0.0e+00 1110.5 729 100.0
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 4.7e-34 150.6 481 29.7
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 1.3e-31 142.5 458 29.9
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 6.3e-31 140.2 379 30.6
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 6.3e-31 140.2 467 27.8
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 2.0e-29 135.2 454 27.8
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 2.7e-29 134.8 398 28.6
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 7.7e-29 133.3 380 31.1
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 2.9e-28 131.3 381 29.7
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 8.5e-28 129.8 389 29.0
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 1.1e-27 129.4 376 29.5
Os05g0147200 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 1.9e-27 128.6 434 27.9
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 1.9e-27 128.6 373 29.0
Cpa.g.sc56.49 Carica papaya HOM05D005257 ORTHO05D006425 2.5e-27 128.3 328 30.5
MCO03G302 Micromonas commoda HOM05D005257 ORTHO05D006425 2.5e-27 128.3 381 31.5
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 3.2e-27 127.9 380 28.7
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 1.6e-26 125.6 381 28.1
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 1.6e-26 125.6 376 29.3
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 1.6e-26 125.6 386 29.0
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 2.1e-26 125.2 378 28.8
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 2.1e-26 125.2 370 27.0
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 2.7e-26 124.8 386 28.8
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 2.7e-26 124.8 378 28.6
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 2.7e-26 124.8 381 27.8
Hund03701 Selenicereus undatus HOM05D005257 ORTHO05D006425 2.7e-26 124.8 317 30.0
Zm00001eb417990 Zea mays HOM05D005257 ORTHO05D006425 6.1e-26 123.6 425 27.3
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 8.0e-26 123.2 373 30.0
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 1.0e-25 122.9 385 28.1
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 1.4e-25 122.5 378 29.1
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 2.3e-25 121.7 371 28.8
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 3.0e-25 121.3 387 28.2
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 4.0e-25 120.9 380 28.2
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 5.2e-25 120.6 319 29.5
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 5.2e-25 120.6 378 27.8
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 5.2e-25 120.6 371 27.8
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 5.2e-25 120.6 318 28.0
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 6.8e-25 120.2 379 28.8
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 8.8e-25 119.8 378 28.3
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 8.8e-25 119.8 377 28.9
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 1.2e-24 119.4 390 27.9
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 1.5e-24 119.0 379 28.8
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 1.5e-24 119.0 379 28.8
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 1.5e-24 119.0 378 27.2
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 2.0e-24 118.6 379 28.8
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 2.0e-24 118.6 371 27.2
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 2.6e-24 118.2 375 28.8
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 2.6e-24 118.2 371 28.3
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 3.4e-24 117.9 319 27.9
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 3.4e-24 117.9 318 27.4
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 3.4e-24 117.9 371 27.2
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 4.4e-24 117.5 464 28.0
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 4.4e-24 117.5 385 27.5
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 4.4e-24 117.5 371 27.2
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 4.4e-24 117.5 371 28.0
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 7.5e-24 116.7 387 27.1
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 9.8e-24 116.3 382 27.0
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 9.8e-24 116.3 380 27.6
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 9.8e-24 116.3 371 27.8
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 1.3e-23 115.9 377 27.3
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 1.3e-23 115.9 330 26.7
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 1.3e-23 115.9 378 26.5
SMO172G0149 Selaginella moellendorffii HOM05D005257 ORTHO05D006425 1.3e-23 115.9 206 35.0
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 1.7e-23 115.5 370 27.3
Cre09.g415200 Chlamydomonas reinhardtii HOM05D005257 ORTHO05D006425 2.2e-23 115.2 464 28.0
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 2.2e-23 115.2 371 27.2
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 2.2e-23 115.2 378 26.5
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 2.2e-23 115.2 378 27.0
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 2.8e-23 114.8 371 27.2
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 2.8e-23 114.8 371 27.2
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 3.7e-23 114.4 378 26.5
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 3.7e-23 114.4 372 27.2
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 3.7e-23 114.4 378 27.5
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 6.3e-23 113.6 452 26.1
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 6.3e-23 113.6 371 26.7
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 6.3e-23 113.6 371 27.0
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 6.3e-23 113.6 370 27.3
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 6.3e-23 113.6 378 27.8
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 6.3e-23 113.6 368 28.5
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 8.3e-23 113.2 373 26.0
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 8.3e-23 113.2 347 30.3
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 8.3e-23 113.2 347 30.3
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 1.1e-22 112.8 373 25.7
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 1.1e-22 112.8 370 27.0
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 1.4e-22 112.5 362 27.1
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 1.8e-22 112.1 373 25.7
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 1.8e-22 112.1 377 27.9
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 1.8e-22 112.1 377 27.9
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 1.8e-22 112.1 384 27.1
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 2.4e-22 111.7 373 25.7
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 7.0e-22 110.2 362 26.5
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 9.1e-22 109.8 373 26.8
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 1.6e-21 109.0 351 28.2
Hund15057 Selenicereus undatus HOM05D005257 ORTHO05D006425 1.6e-21 109.0 339 28.3
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 2.0e-21 108.6 368 26.4
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 2.7e-21 108.2 362 26.2
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 2.7e-21 108.2 396 26.5
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 2.7e-21 108.2 377 26.8
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 5.9e-21 107.1 371 24.3
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 1.0e-20 106.3 375 28.8
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 2.2e-20 105.1 378 25.7
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 2.2e-20 105.1 366 27.3
SEGI_02385 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 2.9e-20 104.8 118 42.4
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 3.8e-20 104.4 400 26.5
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 6.5e-20 103.6 471 24.4
Hma1.2p1_0768F.1_g215610 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 1.1e-19 102.8 115 43.5
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 1.9e-19 102.1 389 26.7
Sopen03g028050 Solanum pennellii HOM05D005257 ORTHO05D006425 2.5e-19 101.7 275 29.5
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 3.2e-19 101.3 362 25.4
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 5.5e-19 100.5 357 28.6
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 1.2e-18 99.4 373 25.7
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 1.4e-17 95.9 341 27.0
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 5.2e-17 94.0 341 26.7
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 6.8e-17 93.6 381 27.8
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 1.2e-16 92.8 371 27.5
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 8.3e-15 86.7 378 25.9
QL07p027173 Quercus lobata HOM05D005257 ORTHO05D006425 2.4e-14 85.1 379 25.9
COL.COLO4_28605 Corchorus olitorius HOM05D005257 ORTHO05D006425 5.0e-12 77.4 77 45.5
RcHm_v2.0_Chr5g0003011 Rosa chinensis HOM05D005257 ORTHO05D006425 2.6e-08 65.1 62 48.4
RcHm_v2.0_Chr5g0003131 Rosa chinensis HOM05D005257 ORTHO05D006425 2.6e-08 65.1 62 48.4
PRCOL_00000882 Prasinoderma coloniale HOM05D002396 ORTHO05D002779 5.7e-08 63.9 164 28.7
HanXRQChr08g0218791 Helianthus annuus HOM05D002396 ORTHO05D002779 6.4e-07 60.5 135 24.4
AL8G24280 Arabidopsis lyrata HOM05D002396 ORTHO05D002779 8.3e-07 60.1 135 25.2
Nitab4.5_0005609g0030 Nicotiana tabacum HOM05D002396 ORTHO05D002779 8.3e-07 60.1 106 29.2
SalBow3G0072 Salvia bowleyana HOM05D002396 ORTHO05D002779 1.8e-06 58.9 106 27.4
CiPaw.13G163900 Carya illinoinensis HOM05D002396 ORTHO05D002779 2.4e-06 58.5 106 27.4
Migut.N02302 Erythranthe guttata HOM05D002396 ORTHO05D002779 2.4e-06 58.5 110 26.4
Glyma.08G302400 Glycine max HOM05D002396 ORTHO05D002779 2.4e-06 58.5 106 27.4
Aqoxy1G00299 Aquilegia oxysepala HOM05D002396 ORTHO05D002779 3.2e-06 58.2 106 26.4
Carub.0002s2661 Capsella rubella HOM05D002396 ORTHO05D002779 4.1e-06 57.8 106 26.4
FvH4_3g43230 Fragaria vesca HOM05D002396 ORTHO05D002779 4.1e-06 57.8 107 28.0
FAN11G1601 Fragaria x ananassa HOM05D002396 ORTHO05D002779 4.1e-06 57.8 107 28.0
FAN21G4049 Fragaria x ananassa HOM05D002396 ORTHO05D002779 4.1e-06 57.8 107 28.0
Sed0019733 Sechium edule HOM05D002396 ORTHO05D002779 4.1e-06 57.8 106 27.4
Sed0022440 Sechium edule HOM05D002396 ORTHO05D002779 5.4e-06 57.4 104 26.9
Sopen03g040900 Solanum pennellii HOM05D002396 ORTHO05D002779 5.4e-06 57.4 113 27.4
ECA233G5435 Erigeron canadensis HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
FvH4_3g43240 Fragaria vesca HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
FAN11G2216 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
FAN21G1898 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Lj2A648T13 Lonicera japonica HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Nitab4.5_0002778g0020 Nicotiana tabacum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
PSO675G8719 Papaver somniferum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
PSO732G0266 Papaver somniferum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
PSO732G0489 Papaver somniferum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Potri.016G121100 Populus trichocarpa HOM05D002396 ORTHO05D002779 7.0e-06 57.0 115 26.1
RcHm_v2.0_Chr5g0077291 Rosa chinensis HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Solyc03g116050.1 Solanum lycopersicum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 113 28.3
Sopen03g035040 Solanum pennellii HOM05D002396 ORTHO05D002779 7.0e-06 57.0 113 27.4
PGSC0003DMG400022902 Solanum tuberosum HOM05D002396 ORTHO05D002779 7.0e-06 57.0 113 27.4
SGA_v2.0_scaffold3G01533 Striga asiatica HOM05D002396 ORTHO05D002779 7.0e-06 57.0 106 26.4
Atru.chr5.3018 Acer truncatum HOM05D002396 ORTHO05D002779 9.2e-06 56.6 106 25.5
EL10Ac7g15883 Beta vulgaris HOM05D002396 ORTHO05D002779 9.2e-06 56.6 106 26.4
Hma1.2p1_0728F.1_g209280 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 9.2e-06 56.6 106 25.5
PSO063G5000 Papaver somniferum HOM05D002396 ORTHO05D002779 9.2e-06 56.6 125 24.8
Peaxi162Scf00000g00752 Petunia axillaris HOM05D002396 ORTHO05D002779 9.2e-06 56.6 110 26.4


User provided reference genes

Program Settings