Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000013 Prasinoderma coloniale HOM05D007023 ORTHO05D008684 3.7e-244 847.8 434 100.0
Cre13.g592300 Chlamydomonas reinhardtii HOM05D007023 ORTHO05D008684 8.8e-73 278.5 348 48.9
Os04g0531300 Oryza sativa ssp. japonica HOM05D007023 ORTHO05D008684 3.4e-72 276.6 323 48.6
Medtr8g067420 Medicago truncatula HOM05D007023 ORTHO05D008684 1.3e-71 274.6 289 50.5
Migut.H00302 Erythranthe guttata HOM05D007023 ORTHO05D008684 2.2e-71 273.9 321 48.6
Eucgr.H02404 Eucalyptus grandis HOM05D007023 ORTHO05D008684 2.2e-71 273.9 289 50.9
Ca_22636_v3 Cicer arietinum L. HOM05D007023 ORTHO05D008684 3.7e-71 273.1 289 50.2
Zm00001eb427250 Zea mays HOM05D007023 ORTHO05D008684 4.9e-71 272.7 323 48.0
Psat4g120720 Pisum sativum HOM05D007023 ORTHO05D008684 1.1e-70 271.6 289 49.8
TPR.G15263 Trifolium pratense HOM05D007023 ORTHO05D008684 1.8e-70 270.8 289 50.2
Nitab4.5_0008244g0010 Nicotiana tabacum HOM05D007023 ORTHO05D008684 2.4e-70 270.4 292 50.3
Lalb_Chr05g0228901 Lupinus albus HOM05D007023 ORTHO05D008684 3.1e-70 270.0 289 49.1
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 3.1e-70 270.0 293 50.5
MSTRG.15333 Avicennia marina HOM05D007023 ORTHO05D008684 4.1e-70 269.6 321 47.0
PGSC0003DMG401027015 Solanum tuberosum HOM05D007023 ORTHO05D008684 7.0e-70 268.9 289 50.5
arahy.Tifrunner.gnm1.ann1.K8CYMK Arachis hypogaea HOM05D007023 ORTHO05D008684 1.2e-69 268.1 322 46.3
arahy.Tifrunner.gnm1.ann1.RZF5H4 Arachis hypogaea HOM05D007023 ORTHO05D008684 1.2e-69 268.1 322 46.3
Glyma.01G097500 Glycine max HOM05D007023 ORTHO05D008684 1.2e-69 268.1 289 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3040 Anthoceros agrestis HOM05D007023 ORTHO05D008684 1.6e-69 267.7 340 45.0
Prupe.5G015900 Prunus persica HOM05D007023 ORTHO05D008684 2.0e-69 267.3 337 44.2
Duzib147G1315 Durio zibethinus HOM05D007023 ORTHO05D008684 2.7e-69 266.9 290 49.0
Pp3c1_32580 Physcomitrium patens HOM05D007023 ORTHO05D008684 4.5e-69 266.2 334 45.5
Aqoxy6G00621 Aquilegia oxysepala HOM05D007023 ORTHO05D008684 5.9e-69 265.8 321 46.4
DCAR_025846 Daucus carota HOM05D007023 ORTHO05D008684 5.9e-69 265.8 289 49.1
RcHm_v2.0_Chr7g0214881 Rosa chinensis HOM05D007023 ORTHO05D008684 7.7e-69 265.4 288 48.6
Atru.chr3.1139 Acer truncatum HOM05D007023 ORTHO05D008684 1.0e-68 265.0 321 45.2
Oeu054743.1 Olea europaea HOM05D007023 ORTHO05D008684 1.0e-68 265.0 321 45.5
Cpa.g.sc129.26 Carica papaya HOM05D007023 ORTHO05D008684 1.3e-68 264.6 322 46.3
MELO3C007688.2 Cucumis melo HOM05D007023 ORTHO05D008684 1.3e-68 264.6 288 49.0
PSO675G3949 Papaver somniferum HOM05D007023 ORTHO05D008684 1.3e-68 264.6 288 48.3
CANSAT01G0575 Cannabis sativa HOM05D007023 ORTHO05D008684 2.3e-68 263.8 322 46.0
CAN.G65.166 Capsicum annuum HOM05D007023 ORTHO05D008684 2.3e-68 263.8 290 49.3
Lj3g0003372 Lotus japonicus HOM05D007023 ORTHO05D008684 2.3e-68 263.8 288 49.7
Nn5g29755 Nelumbo nucifera HOM05D007023 ORTHO05D008684 2.3e-68 263.8 322 46.0
MD06G1013700 Malus domestica HOM05D007023 ORTHO05D008684 2.9e-68 263.5 289 48.4
Phvul.003G285100 Phaseolus vulgaris HOM05D007023 ORTHO05D008684 2.9e-68 263.5 288 48.3
Mapoly0035s0067 Marchantia polymorpha HOM05D007023 ORTHO05D008684 3.8e-68 263.1 339 44.5
CiPaw.07G041500 Carya illinoinensis HOM05D007023 ORTHO05D008684 6.6e-68 262.3 289 49.5
Dinv26994 Davidia involucrata HOM05D007023 ORTHO05D008684 6.6e-68 262.3 289 48.4
Haze_03942 Corylus avellana HOM05D007023 ORTHO05D008684 8.6e-68 261.9 288 48.6
Dinv36989 Davidia involucrata HOM05D007023 ORTHO05D008684 1.1e-67 261.5 322 45.3
PSO675G1235 Papaver somniferum HOM05D007023 ORTHO05D008684 1.1e-67 261.5 288 47.6
Rhsim10G0082100 Rhododendron simsii HOM05D007023 ORTHO05D008684 1.1e-67 261.5 316 45.9
Actinidia36388 Actinidia chinensis HOM05D007023 ORTHO05D008684 1.5e-67 261.2 288 50.0
Cfa006816 Carpinus fangiana HOM05D007023 ORTHO05D008684 1.5e-67 261.2 288 48.3
Cc07_g07740 Coffea canephora HOM05D007023 ORTHO05D008684 1.5e-67 261.2 321 46.1
ATR0697G179 Amborella trichopoda HOM05D007023 ORTHO05D008684 3.3e-67 260.0 322 45.3
AUR62005879 Chenopodium quinoa HOM05D007023 ORTHO05D008684 3.3e-67 260.0 288 49.7
Carub.0005s1598 Capsella rubella HOM05D007023 ORTHO05D008684 4.2e-67 259.6 333 45.6
COL.COLO4_11668 Corchorus olitorius HOM05D007023 ORTHO05D008684 4.2e-67 259.6 288 49.0
HanXRQChr07g0192781 Helianthus annuus HOM05D007023 ORTHO05D008684 5.5e-67 259.2 289 49.1
CBR_g18738 Chara braunii HOM05D007023 ORTHO05D008684 1.2e-66 258.1 321 45.8
Glyma.08G273200 Glycine max HOM05D007023 ORTHO05D008684 1.2e-66 258.1 289 48.4
Gohir.A02G146800 Gossypium hirsutum HOM05D007023 ORTHO05D008684 1.2e-66 258.1 290 47.9
TAR628G0428 Trochodendron aralioides HOM05D007023 ORTHO05D008684 1.6e-66 257.7 321 44.5
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 2.1e-66 257.3 360 42.8
MCO10G301 Micromonas commoda HOM05D007023 ORTHO05D008684 2.8e-66 256.9 325 42.2
Sed0007427 Sechium edule HOM05D007023 ORTHO05D008684 2.8e-66 256.9 289 48.4
Gorai.003G035300 Gossypium raimondii HOM05D007023 ORTHO05D008684 3.6e-66 256.5 290 47.6
Ciclev10026068m.g Citrus clementina HOM05D007023 ORTHO05D008684 6.1e-66 255.8 322 45.0
Lsat_1_v5_gn_2_82020 Lactuca sativa HOM05D007023 ORTHO05D008684 6.1e-66 255.8 289 47.8
Sp5g12460 Schrenkiella parvula HOM05D007023 ORTHO05D008684 6.1e-66 255.8 343 44.6
BcaB01g00687 Brassica carinata HOM05D007023 ORTHO05D008684 8.0e-66 255.4 343 44.0
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 8.0e-66 255.4 358 43.0
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 8.0e-66 255.4 358 43.0
CDE01G0563 Ceratophyllum demersum HOM05D007023 ORTHO05D008684 8.0e-66 255.4 322 44.1
Gohir.D03G033700 Gossypium hirsutum HOM05D007023 ORTHO05D008684 8.0e-66 255.4 290 47.6
Peaxi162Scf00413g00053 Petunia axillaris HOM05D007023 ORTHO05D008684 8.0e-66 255.4 288 50.0
Pp3c17_7260 Physcomitrium patens HOM05D007023 ORTHO05D008684 1.0e-65 255.0 337 43.9
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.4e-65 254.6 360 42.5
Manes.12G120300 Manihot esculenta HOM05D007023 ORTHO05D008684 1.4e-65 254.6 288 49.3
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 6.8e-65 252.3 338 44.4
Hund14163 Selenicereus undatus HOM05D007023 ORTHO05D008684 1.2e-64 251.5 275 50.9
AT3G49640 Arabidopsis thaliana HOM05D007023 ORTHO05D008684 2.0e-64 250.8 322 44.7
Solyc06g073230.4 Solanum lycopersicum HOM05D007023 ORTHO05D008684 2.0e-64 250.8 287 48.4
TWI74G0708 Tripterygium wilfordii HOM05D007023 ORTHO05D008684 2.0e-64 250.8 289 47.4
ECA238G4796 Erigeron canadensis HOM05D007023 ORTHO05D008684 4.4e-64 249.6 288 48.3
vmacro05475 Vaccinium macrocarpon HOM05D007023 ORTHO05D008684 2.9e-63 246.9 309 45.3
EL10Ac6g13296 Beta vulgaris HOM05D007023 ORTHO05D008684 3.7e-63 246.5 275 49.5
BcaC07g39427 Brassica carinata HOM05D007023 ORTHO05D008684 3.7e-63 246.5 333 43.5
SalBow3G3759 Salvia bowleyana HOM05D007023 ORTHO05D008684 3.7e-63 246.5 340 43.2
CsaV3_6G044650 Cucumis sativus L. HOM05D007023 ORTHO05D008684 1.8e-62 244.2 267 48.7
MBI16_g17836_MAGBIO Magnolia biondii HOM05D007023 ORTHO05D008684 2.7e-61 240.4 288 46.5
Thecc.01G082300 Theobroma cacao HOM05D007023 ORTHO05D008684 2.9e-60 236.9 265 49.4
SMO143G0313 Selaginella moellendorffii HOM05D007023 ORTHO05D008684 2.5e-59 233.8 337 40.4
SGA_v2.0_scaffold121G33110 Striga asiatica HOM05D007023 ORTHO05D008684 3.1e-57 226.9 316 41.1
ClCG01G018110 Citrullus lanatus HOM05D007023 ORTHO05D008684 2.0e-56 224.2 309 42.7
unitig_744.g24333 Utricularia gibba HOM05D007023 ORTHO05D008684 9.8e-56 221.9 302 43.7
VMungo0251G1182 Vigna mungo HOM05D007023 ORTHO05D008684 1.1e-54 218.4 236 51.3
CARHR158670 Cardamine hirsuta HOM05D007023 ORTHO05D008684 7.0e-54 215.7 277 45.1
Lj4C174T3 Lonicera japonica HOM05D007023 ORTHO05D008684 1.0e-52 211.8 390 35.4
Aa31LG4G18110 Aethionema arabicum HOM05D007023 ORTHO05D008684 1.2e-50 204.9 385 37.7
Thhalv10010537m.g Eutrema salsugineum HOM05D007023 ORTHO05D008684 7.5e-48 195.7 242 46.3
Sc16g0000770 Simmondsia chinensis HOM05D007023 ORTHO05D008684 1.3e-47 194.9 242 44.6
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 9.2e-46 188.7 345 36.2
AUR62032872 Chenopodium quinoa HOM05D007023 ORTHO05D008684 1.3e-44 184.9 359 34.3
QL06p037642 Quercus lobata HOM05D007023 ORTHO05D008684 5.1e-44 183.0 188 53.2
Nitab4.5_0002084g0080 Nicotiana tabacum HOM05D007023 ORTHO05D008684 1.4e-41 174.9 297 39.1
Ah.03g134430 Amaranthus hybridus HOM05D007023 ORTHO05D008684 3.4e-40 170.2 173 53.8
Cfa022401 Carpinus fangiana HOM05D007023 ORTHO05D008684 5.1e-36 156.4 312 35.9
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 2.9e-31 140.6 141 53.2
GSVIVG01005613001 Vitis vinifera HOM05D007023 ORTHO05D008684 3.8e-31 140.2 157 49.0
Hund25787 Selenicereus undatus HOM05D007023 ORTHO05D008684 1.2e-29 135.2 201 41.8
Lsat_1_v5_gn_5_158981 Lactuca sativa HOM05D007023 ORTHO05D008684 4.0e-25 120.2 132 49.2
SalBow3G2833 Salvia bowleyana HOM05D007023 ORTHO05D008684 1.4e-22 111.7 300 30.0
Hma1.2p1_0996F.1_g245950 Hydrangea macrophylla HOM05D007023 ORTHO05D008684 1.0e-20 105.5 122 45.1
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 6.6e-20 102.8 256 31.2
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 8.7e-20 102.4 267 28.1
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 1.9e-19 101.3 249 29.7
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 2.5e-19 100.9 249 29.3
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 7.3e-19 99.4 246 28.9
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 7.3e-19 99.4 277 30.0
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 1.6e-18 98.2 249 30.9
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 2.8e-18 97.4 277 30.0
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 3.6e-18 97.1 249 28.5
Mapoly0048s0005 Marchantia polymorpha HOM05D004633 ORTHO05D005503 3.6e-18 97.1 274 29.2
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 3.6e-18 97.1 277 27.8
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 3.6e-18 97.1 249 30.1
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 4.8e-18 96.7 272 30.5
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 4.8e-18 96.7 249 30.1
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.1e-17 95.5 249 28.5
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 1.1e-17 95.5 249 29.7
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 1.1e-17 95.5 249 30.9
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 1.1e-17 95.5 282 26.6
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 1.4e-17 95.1 249 28.9
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 1.4e-17 95.1 252 29.8
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 1.8e-17 94.7 252 29.0
Hma1.2p1_1119F.1_g259150 Hydrangea macrophylla HOM05D007023 ORTHO05D008684 1.8e-17 94.7 170 39.4
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 1.8e-17 94.7 282 26.2
QL06p037629 Quercus lobata HOM05D007023 ORTHO05D008684 1.8e-17 94.7 171 33.9
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 1.8e-17 94.7 252 29.0
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 2.4e-17 94.4 253 29.6
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.4e-17 94.4 252 29.0
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.4e-17 94.4 252 29.0
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.4e-17 94.4 252 29.0
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 2.4e-17 94.4 252 29.0
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 3.1e-17 94.0 249 28.9
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 3.1e-17 94.0 249 29.7
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 4.0e-17 93.6 252 29.0
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 4.0e-17 93.6 249 29.7
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 9.0e-17 92.4 249 29.3
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 2.0e-16 91.3 270 29.6
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 2.0e-16 91.3 249 30.1
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 2.0e-16 91.3 249 29.7
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 2.0e-16 91.3 258 29.1
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 2.6e-16 90.9 249 29.3
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.6e-16 90.9 252 28.6
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 2.6e-16 90.9 249 29.3
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 2.6e-16 90.9 282 26.2
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 9.9e-16 89.0 252 29.4
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 9.9e-16 89.0 249 28.1
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 1.3e-15 88.6 259 29.7
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 1.7e-15 88.2 259 29.3
RcHm_v2.0_Chr7g0219891 Rosa chinensis HOM05D007023 ORTHO05D008684 2.9e-15 87.4 196 32.1
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 6.4e-15 86.3 276 29.0
MCO11G882 Micromonas commoda HOM05D004284 ORTHO05D044199 1.4e-14 85.1 259 30.5
Haze_26235 Corylus avellana HOM05D004633 ORTHO05D008684 3.2e-14 84.0 297 23.6
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 4.2e-14 83.6 302 27.2
SEGI_24730 Sequoiadendron giganteum HOM05D007023 ORTHO05D008684 5.5e-14 83.2 95 45.3
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 9.3e-14 82.4 229 28.8
CBR_g29609 Chara braunii HOM05D004284 ORTHO05D006610 1.2e-13 82.0 266 29.3
Nitab4.5_0003962g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 1.2e-13 82.0 210 27.6
PRCOL_00002812 Prasinoderma coloniale HOM05D004284 ORTHO05D006610 1.2e-13 82.0 302 27.2
DCAR_010864 Daucus carota HOM05D004633 ORTHO05D005503 1.6e-13 81.6 177 31.1
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 1.3e-12 78.6 259 28.2
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 8.7e-12 75.9 259 26.3
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 5.6e-11 73.2 253 28.1
Haze_26560 Corylus avellana HOM05D004633 ORTHO05D005503 9.6e-11 72.4 188 27.1
CAN.G82.15 Capsicum annuum HOM05D004633 ORTHO05D005503 1.6e-10 71.6 183 29.0
Cfa023304 Carpinus fangiana HOM05D004633 ORTHO05D005503 1.6e-10 71.6 164 28.0
Cre04.g229948 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D006610 1.6e-10 71.6 265 27.2
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 2.8e-10 70.9 259 27.0
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 1.8e-09 68.2 253 25.7
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 2.0e-08 64.7 253 26.1
unitig_22.g6224 Utricularia gibba HOM05D004284 ORTHO05D006610 2.6e-08 64.3 147 31.3
Nn5g30384 Nelumbo nucifera HOM05D004633 ORTHO05D005503 1.3e-07 62.0 148 29.1
QL06p040440 Quercus lobata HOM05D004633 ORTHO05D005503 4.9e-07 60.1 173 26.0
VMungo0251G2786 Vigna mungo HOM05D007023 ORTHO05D008684 4.2e-06 57.0 54 44.4
GSVIVG01003711001 Vitis vinifera HOM05D007023 ORTHO05D008684 9.3e-06 55.8 123 29.3


User provided reference genes

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