Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.4e-53 210.7 104 100.0
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 2.9e-30 135.2 71 94.4
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.5e-30 134.0 71 93.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.5e-29 132.1 71 93.0
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.5e-29 132.1 71 93.0
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.8e-27 125.9 71 87.3
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.7e-26 120.9 71 85.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.1e-24 116.7 71 80.3
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.0e-19 100.1 74 67.6
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 8.7e-19 97.1 74 66.2
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.1e-18 96.7 71 60.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 1.5e-18 96.3 74 63.5
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.9e-18 95.9 79 62.0
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.3e-18 94.7 74 62.2
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 5.7e-18 94.4 74 63.5
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 5.7e-18 94.4 75 64.0
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 7.4e-18 94.0 74 64.9
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.4e-18 94.0 75 62.7
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 9.7e-18 93.6 74 60.8
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 9.7e-18 93.6 74 60.8
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.3e-17 93.2 74 60.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.2e-17 92.4 73 65.8
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.2e-17 92.4 73 65.8
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-17 92.4 73 63.0
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-17 92.4 73 63.0
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 2.2e-17 92.4 71 59.2
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.8e-17 92.0 74 59.5
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 2.8e-17 92.0 74 66.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.8e-17 92.0 74 63.5
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.7e-17 91.7 74 64.9
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 3.7e-17 91.7 74 64.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.8e-17 91.3 74 62.2
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 8.2e-17 90.5 74 62.2
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.1e-16 90.1 74 59.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.1e-16 90.1 73 61.6
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.4e-16 89.7 74 66.2
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.4e-16 89.7 73 63.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.8e-16 89.4 74 60.8
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 3.1e-16 88.6 74 59.5
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.1e-16 88.2 74 55.4
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 4.1e-16 88.2 86 51.2
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 6.9e-16 87.4 74 60.8
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 9.0e-16 87.0 74 59.5
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 9.0e-16 87.0 74 59.5
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 9.0e-16 87.0 73 58.9
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 9.0e-16 87.0 73 60.3
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.2e-15 86.7 69 56.5
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.2e-15 86.7 74 59.5
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.2e-15 86.7 74 60.8
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.5e-15 86.3 74 59.5
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.0e-15 85.9 74 60.8
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.6e-15 85.5 73 57.5
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 3.4e-15 85.1 71 56.3
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 4.5e-15 84.7 74 59.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 60.3
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 60.3
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 60.3
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 60.3
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 60.3
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 5.9e-15 84.3 73 61.6
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.0e-14 83.6 73 58.9
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.3e-14 83.2 74 56.8
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.3e-14 83.2 73 60.3
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.7e-14 82.8 74 55.4
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.7e-14 82.8 73 58.9
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.2e-14 82.4 72 59.7
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.9e-14 82.0 73 58.9
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 3.8e-14 81.6 74 54.1
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 8.5e-14 80.5 73 56.2
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-13 80.1 73 53.4
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.4e-13 79.7 76 55.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.9e-13 79.3 73 53.4
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.5e-13 79.0 74 52.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.2e-13 78.6 73 54.8
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 3.2e-13 78.6 73 52.1
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 5.5e-13 77.8 73 53.4
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 7.2e-13 77.4 76 50.0
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 7.2e-13 77.4 74 50.0
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 7.2e-13 77.4 75 52.0
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 1.6e-12 76.3 74 52.7
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.6e-12 76.3 74 55.4
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.7e-12 75.5 73 54.8
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 3.6e-12 75.1 74 51.4
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 3.6e-12 75.1 74 51.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 3.6e-12 75.1 74 50.0
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 3.6e-12 75.1 74 51.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.6e-12 75.1 73 52.1
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.6e-12 74.7 74 51.4
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.6e-12 74.7 74 51.4
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 4.6e-12 74.7 74 51.4
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 4.6e-12 74.7 70 44.3
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 6.1e-12 74.3 74 48.6
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 6.1e-12 74.3 74 48.6
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 6.1e-12 74.3 74 51.4
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.0e-11 73.6 74 52.7
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.8e-11 72.8 74 50.0
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 3.0e-11 72.0 74 48.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.0e-11 72.0 74 50.0
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.5e-10 69.7 73 50.7
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-09 66.2 74 44.6
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.2e-09 65.9 73 47.9
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 2.8e-09 65.5 69 43.5
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 4.8e-09 64.7 73 46.6
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 6.3e-09 64.3 75 49.3
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 8.2e-09 63.9 73 45.2
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.4e-08 62.4 73 43.8
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 6.9e-08 60.8 73 43.8
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 9.1e-08 60.5 72 41.7
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 4.5e-07 58.2 72 45.8
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 1.7e-06 56.2 73 42.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.7e-06 56.2 76 42.1
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 5.0e-06 54.7 73 42.5
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 5.0e-06 54.7 73 42.5
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 5.0e-06 54.7 73 42.5
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 5.0e-06 54.7 73 42.5
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 5.0e-06 54.7 73 42.5
Sopen04g025080 Solanum pennellii HOM05D001730 ORTHO05D027964 6.5e-06 54.3 31 83.9


User provided reference genes

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