Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.9e-248 862.1 432 100.0
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 7.3e-245 850.1 432 98.1
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 2.8e-244 848.2 432 98.1
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 3.6e-236 821.2 434 94.7
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 7.9e-231 803.5 432 91.7
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.1e-227 793.1 455 87.7
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 6.5e-209 730.7 433 85.5
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 7.4e-189 664.1 448 72.1
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.7e-188 662.9 434 75.8
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 2.8e-188 662.1 435 74.3
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.1e-187 660.2 433 74.1
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 9.1e-187 657.1 433 73.9
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 8.8e-182 640.6 440 71.6
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 3.3e-181 638.6 425 73.9
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 9.7e-181 637.1 431 70.5
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 2.8e-180 635.6 431 70.5
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.8e-180 634.8 419 73.7
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 6.3e-180 634.4 419 73.7
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 8.3e-180 634.0 423 72.8
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 1.1e-179 633.6 433 70.9
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.1e-179 633.6 425 71.8
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.4e-179 633.3 437 71.6
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 3.1e-179 632.1 423 72.1
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 1.6e-178 629.8 449 70.4
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 5.9e-178 627.9 422 72.0
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 5.9e-178 627.9 431 71.7
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 1.3e-177 626.7 421 72.7
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 1.7e-177 626.3 420 73.6
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 5.0e-177 624.8 435 70.6
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 1.1e-176 623.6 453 67.8
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.2e-176 622.1 419 71.6
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 4.2e-176 621.7 423 71.6
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 1.2e-175 620.2 423 71.4
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 1.2e-175 620.2 430 69.1
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 6.1e-175 617.8 422 71.3
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 8.8e-174 614.0 420 71.2
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 1.5e-173 613.2 423 68.3
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 1.5e-173 613.2 420 71.0
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 1.5e-173 613.2 423 70.7
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 4.4e-173 611.7 430 69.3
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 9.8e-173 610.5 422 70.9
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 2.2e-172 609.4 423 70.0
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 4.8e-172 608.2 431 68.2
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 6.3e-172 607.8 431 68.7
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 8.3e-172 607.4 421 69.8
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 2.4e-171 605.9 431 68.4
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 4.1e-171 605.1 421 70.1
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 7.0e-171 604.4 423 69.5
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 7.0e-171 604.4 424 70.5
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 7.0e-171 604.4 424 70.5
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.0e-170 602.8 432 68.3
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 7.7e-170 600.9 419 68.7
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 1.0e-169 600.5 419 70.9
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.3e-169 600.1 423 68.8
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 1.7e-169 599.7 422 68.5
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.3e-169 599.4 432 67.6
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 3.8e-169 598.6 424 69.1
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.5e-168 595.9 424 69.6
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 5.5e-168 594.7 419 67.3
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 5.5e-168 594.7 422 68.5
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 5.5e-168 594.7 436 66.5
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 1.6e-167 593.2 434 67.5
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 2.8e-167 592.4 419 69.0
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 3.6e-167 592.0 424 69.1
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 4.7e-167 591.7 424 69.1
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 4.7e-167 591.7 422 69.0
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 6.1e-167 591.3 424 69.3
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 8.0e-167 590.9 424 69.1
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.0e-166 590.5 413 70.0
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 1.0e-166 590.5 421 67.2
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 1.0e-166 590.5 419 69.7
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 1.4e-166 590.1 423 67.8
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 1.4e-166 590.1 433 67.0
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 5.2e-166 588.2 434 67.1
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 6.8e-166 587.8 423 68.1
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 6.8e-166 587.8 423 67.6
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 1.5e-165 586.6 423 67.8
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 2.0e-165 586.3 420 68.1
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 2.0e-165 586.3 420 68.1
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 2.0e-165 586.3 423 68.8
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 3.4e-165 585.5 422 67.1
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 3.4e-165 585.5 420 66.4
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.3e-164 583.6 469 63.1
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 4.9e-164 581.6 425 66.1
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 4.9e-164 581.6 424 67.2
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 6.3e-164 581.3 541 58.2
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 9.2e-163 577.4 419 64.9
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 1.2e-162 577.0 422 68.5
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 2.7e-162 575.9 424 65.6
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 6.6e-161 571.2 424 65.6
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 1.5e-160 570.1 435 67.1
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 7.3e-160 567.8 427 65.8
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 2.8e-159 565.8 427 65.6
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 1.4e-158 563.5 421 65.6
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.4e-157 558.9 421 64.8
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.7e-156 555.4 421 64.4
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.9e-156 555.1 421 64.6
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 8.6e-153 544.3 427 62.8
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 2.5e-152 542.7 354 73.4
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 9.5e-152 540.8 415 64.1
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 4.7e-151 538.5 419 60.4
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 3.1e-150 535.8 422 61.1
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 3.2e-139 499.2 431 56.4
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 1.9e-136 490.0 418 59.3
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 7.3e-136 488.0 420 55.2
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 9.5e-136 487.6 434 59.0
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 8.1e-135 484.6 335 71.0
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.2e-133 480.7 421 54.9
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 7.1e-131 471.5 423 54.4
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 2.9e-124 449.5 302 73.5
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 8.7e-121 438.0 353 63.5
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.6e-120 435.3 425 49.6
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 6.9e-118 428.3 271 76.0
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 1.3e-116 424.1 427 54.1
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 3.1e-110 402.9 265 73.2
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 5.3e-110 402.1 421 51.1
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.4e-83 314.3 198 77.3
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 1.9e-83 313.9 413 43.1
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 3.8e-76 289.7 235 58.7
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 3.9e-73 279.6 182 73.1
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 1.6e-66 257.7 291 49.8
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 3.6e-50 203.4 102 100.0
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 5.7e-48 196.1 136 69.1
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.5e-32 144.8 85 83.5
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.3e-28 131.7 90 65.6
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 3.9e-28 130.2 91 62.6
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 3.3e-11 73.9 362 22.4
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.1e-09 68.9 41 68.3
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 6.9e-09 66.2 91 42.9


User provided reference genes

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