Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 0.0e+00 1204.1 589 100.0
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.9e-299 1031.9 535 94.6
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 3.2e-299 1031.2 535 94.6
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 3.6e-279 964.5 533 88.9
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.8e-263 911.0 536 84.3
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 1.8e-262 909.1 523 85.5
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 2.0e-253 879.0 508 85.6
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 2.1e-226 789.3 536 71.6
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.5e-219 765.8 527 69.8
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 3.2e-219 765.4 527 69.8
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 1.8e-217 759.6 535 69.0
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 2.3e-217 759.2 526 69.8
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 1.2e-216 756.9 539 68.8
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 2.9e-212 742.3 522 69.9
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 3.6e-210 735.3 528 67.0
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 5.2e-209 731.5 535 66.5
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 2.0e-208 729.6 528 67.8
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 1.7e-207 726.5 536 65.9
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 1.9e-203 713.0 526 66.3
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.1e-202 709.5 524 66.6
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 2.0e-200 703.0 528 65.0
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 8.3e-199 697.6 524 65.6
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.4e-198 696.8 528 64.6
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 3.1e-198 695.7 521 66.0
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 5.0e-196 688.3 538 62.6
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 8.6e-196 687.6 529 63.7
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 4.7e-194 681.8 538 63.2
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 6.1e-194 681.4 523 64.2
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.8e-193 679.9 574 59.9
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 6.8e-193 677.9 550 60.7
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 9.8e-192 674.1 552 60.3
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.9e-191 672.5 525 64.0
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 3.7e-191 672.2 525 64.0
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 4.9e-191 671.8 528 61.4
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 6.4e-191 671.4 525 62.5
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 1.4e-190 670.2 525 63.6
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 5.4e-190 668.3 529 62.0
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 7.0e-190 667.9 525 62.5
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.7e-189 666.0 526 62.0
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.0e-188 664.1 575 58.4
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 3.0e-188 662.5 528 62.7
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 1.1e-187 660.6 525 61.9
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 7.3e-187 657.9 575 57.9
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 4.7e-186 655.2 527 61.1
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.4e-185 653.7 575 57.6
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 3.1e-185 652.5 528 60.0
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 5.2e-185 651.7 522 62.3
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 2.6e-184 649.4 527 59.6
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 2.9e-183 646.0 528 60.6
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 6.4e-183 644.8 497 63.4
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 1.4e-182 643.7 528 60.4
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 1.9e-182 643.3 527 60.3
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 3.2e-182 642.5 528 59.8
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 2.0e-181 639.8 511 62.2
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 2.0e-181 639.8 528 60.6
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.7e-181 639.4 526 59.3
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 1.3e-180 637.1 527 59.8
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 1.1e-179 634.0 526 61.2
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 2.5e-179 632.9 528 60.0
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 3.3e-179 632.5 526 60.3
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 3.6e-178 629.0 549 57.6
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 8.1e-178 627.9 528 59.3
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 1.5e-176 623.6 525 57.7
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 7.5e-176 621.3 570 56.0
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.3e-175 620.5 525 57.9
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 2.4e-174 616.3 525 57.5
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 4.1e-174 615.5 519 59.3
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 5.4e-174 615.1 527 57.7
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 3.5e-173 612.5 527 56.7
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 3.0e-172 609.4 527 56.5
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 5.1e-172 608.6 580 53.6
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 6.6e-172 608.2 527 56.9
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 8.6e-172 607.8 527 56.5
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 4.3e-171 605.5 522 55.9
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 4.3e-171 605.5 522 56.5
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 4.3e-171 605.5 521 58.7
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.8e-169 600.1 522 55.6
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 4.0e-169 599.0 523 55.4
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 5.2e-169 598.6 527 56.0
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 8.9e-169 597.8 521 57.4
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.2e-168 597.4 527 56.7
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.0e-168 596.7 498 58.6
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 2.6e-168 596.3 529 57.7
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 9.9e-168 594.3 528 56.6
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 2.2e-167 593.2 522 54.0
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 4.1e-166 589.0 520 55.4
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 4.1e-166 589.0 528 55.5
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 4.1e-166 589.0 530 55.5
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 5.4e-166 588.6 520 55.4
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 5.4e-166 588.6 527 57.1
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 5.4e-166 588.6 527 55.8
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 5.4e-166 588.6 527 56.9
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 7.1e-166 588.2 527 54.8
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 9.2e-166 587.8 520 55.2
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 2.1e-165 586.6 520 55.0
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 3.9e-164 582.4 520 54.8
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 3.9e-164 582.4 520 55.2
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 2.1e-162 576.6 527 54.1
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 4.7e-162 575.5 522 54.4
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.8e-161 573.5 524 55.3
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 2.4e-161 573.2 522 54.2
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 1.7e-159 567.0 529 56.3
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.3e-158 561.2 530 53.2
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.6e-157 560.5 526 56.1
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 2.3e-156 556.6 493 55.2
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 2.1e-154 550.1 639 47.1
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 3.8e-151 539.3 530 53.8
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 4.2e-150 535.8 522 52.7
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 5.6e-147 525.4 523 51.1
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 4.0e-145 519.2 521 53.2
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 1.7e-143 513.8 496 53.4
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 2.9e-135 486.5 568 45.1
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 8.4e-135 485.0 452 55.5
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 8.8e-124 448.4 458 52.0
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 1.2e-120 438.0 555 44.0
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 3.8e-119 433.0 561 42.6
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 3.5e-112 409.8 330 59.7
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 3.5e-112 409.8 330 59.7
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 6.7e-108 395.6 359 52.6
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 2.1e-101 374.0 522 42.1
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 2.7e-101 373.6 394 49.5
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 2.7e-101 373.6 261 67.8
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 4.0e-100 369.8 505 40.4
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.1e-97 361.7 361 49.6
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 2.0e-96 357.5 317 54.9
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 2.9e-95 353.6 303 55.8
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 9.8e-91 338.6 576 33.7
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 3.8e-87 326.6 283 53.0
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 1.5e-83 314.7 282 54.6
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 9.5e-78 295.4 453 40.2
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 1.4e-65 255.0 193 66.8
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 3.5e-56 223.8 199 54.8
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 3.1e-52 210.7 164 64.0
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 7.8e-48 196.1 120 75.8
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 3.8e-34 150.6 166 47.0
PRCOL_00003856 Prasinoderma coloniale HOM05D004718 ORTHO05D005838 3.3e-30 137.5 564 25.2
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 4.8e-29 133.7 97 59.8
Os03g0192900 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 7.9e-24 116.3 89 64.0
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 2.6e-19 101.3 78 60.3
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 2.5e-17 94.7 154 32.5
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 4.1e-12 77.4 63 57.1
FAN17G1117 Fragaria x ananassa HOM05D004718 ORTHO05D046641 5.0e-10 70.5 101 39.6
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 6.7e-07 60.1 37 70.3
TPR.G35198 Trifolium pratense HOM05D004718 ORTHO05D005838 3.3e-06 57.8 35 74.3
COL.COLO4_16463 Corchorus olitorius HOM05D004718 ORTHO05D155331 4.3e-06 57.4 39 64.1


User provided reference genes

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