Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402015451 Solanum tuberosum HOM05D003114 ORTHO05D003519 1.1e-107 393.3 201 100.0
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 7.4e-107 390.6 201 99.0
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 7.4e-107 390.6 201 99.0
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 3.1e-105 385.2 201 97.0
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 7.9e-101 370.5 216 88.9
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 3.7e-98 361.7 201 90.0
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 1.5e-96 356.3 201 87.6
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 2.6e-96 355.5 201 88.1
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 3.4e-96 355.1 201 87.6
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 5.9e-96 354.4 201 87.6
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 7.7e-96 354.0 201 88.6
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 1.0e-95 353.6 201 86.6
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 1.0e-95 353.6 201 88.6
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 1.3e-95 353.2 201 87.6
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 1.7e-95 352.8 201 86.6
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 1.7e-95 352.8 201 86.1
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 1.7e-95 352.8 201 87.1
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 2.2e-95 352.4 201 87.1
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 2.9e-95 352.1 201 87.6
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 2.9e-95 352.1 201 87.1
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 3.8e-95 351.7 201 86.1
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 5.0e-95 351.3 201 86.6
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 5.0e-95 351.3 201 86.6
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 5.0e-95 351.3 201 86.1
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.5e-95 350.9 201 86.6
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 6.5e-95 350.9 201 85.1
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 8.5e-95 350.5 201 87.6
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 8.5e-95 350.5 201 85.6
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 1.1e-94 350.1 200 85.5
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 1.1e-94 350.1 201 85.6
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 1.9e-94 349.4 201 85.1
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 1.9e-94 349.4 201 86.1
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.6
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.6
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.6
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 86.1
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.1
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.1
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 3.2e-94 348.6 201 85.1
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 4.2e-94 348.2 201 86.1
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 5.5e-94 347.8 201 85.1
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 5.5e-94 347.8 201 84.6
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 7.2e-94 347.4 201 85.1
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 7.2e-94 347.4 201 85.6
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 7.2e-94 347.4 201 84.6
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 9.4e-94 347.1 201 84.1
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 9.4e-94 347.1 201 84.6
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 1.6e-93 346.3 201 84.6
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 1.6e-93 346.3 201 84.6
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 1.6e-93 346.3 201 86.1
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 2.1e-93 345.9 201 84.6
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 2.1e-93 345.9 201 84.6
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 2.1e-93 345.9 201 84.6
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 2.1e-93 345.9 201 84.6
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 2.1e-93 345.9 201 85.6
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 2.7e-93 345.5 201 85.1
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 2.7e-93 345.5 201 84.6
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 3.6e-93 345.1 201 84.1
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 3.6e-93 345.1 201 84.1
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 4.7e-93 344.7 201 85.1
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 4.7e-93 344.7 201 84.1
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 6.1e-93 344.4 201 84.1
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 7.9e-93 344.0 201 85.6
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 7.9e-93 344.0 201 83.6
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 7.9e-93 344.0 201 85.1
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 1.0e-92 343.6 201 84.6
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 1.8e-92 342.8 201 85.1
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 1.8e-92 342.8 199 84.4
VMungo0647G1221 Vigna mungo HOM05D003114 ORTHO05D003519 1.8e-92 342.8 201 83.6
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 2.3e-92 342.4 201 84.1
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 2.3e-92 342.4 201 84.1
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 3.0e-92 342.0 201 83.6
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 3.9e-92 341.7 201 86.1
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 5.1e-92 341.3 201 85.1
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 8.8e-92 340.5 201 83.1
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 8.8e-92 340.5 201 83.1
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 8.8e-92 340.5 201 84.1
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 1.1e-91 340.1 201 82.6
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 1.5e-91 339.7 202 84.7
Peaxi162Scf00064g00323 Petunia axillaris HOM05D003114 ORTHO05D003519 1.5e-91 339.7 181 95.0
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 2.0e-91 339.3 201 84.6
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 2.0e-91 339.3 201 84.6
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 2.0e-91 339.3 201 82.6
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 2.6e-91 339.0 221 78.7
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 3.3e-91 338.6 201 83.1
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 3.3e-91 338.6 204 81.9
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 3.3e-91 338.6 199 82.9
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 3.3e-91 338.6 201 82.1
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 4.4e-91 338.2 201 83.1
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 5.7e-91 337.8 200 85.5
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 7.4e-91 337.4 201 84.6
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 9.7e-91 337.0 201 81.6
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 2.8e-90 335.5 201 80.1
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 2.8e-90 335.5 201 83.1
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 3.7e-90 335.1 201 81.6
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 6.3e-90 334.3 230 75.2
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 6.3e-90 334.3 201 81.6
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 1.1e-89 333.6 243 72.4
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.1e-89 333.6 201 81.6
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 1.4e-89 333.2 201 85.1
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 4.1e-89 331.6 201 79.6
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 4.1e-89 331.6 201 79.6
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 1.2e-88 330.1 245 70.6
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 1.2e-88 330.1 245 70.6
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 1.5e-88 329.7 202 83.2
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 2.0e-88 329.3 190 83.7
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 2.0e-88 329.3 202 80.7
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 3.4e-88 328.6 200 79.5
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 7.7e-88 327.4 202 82.2
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 1.0e-87 327.0 201 80.1
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.3e-87 326.6 201 80.1
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 8.5e-87 323.9 200 85.0
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 1.9e-86 322.8 202 78.7
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 2.5e-86 322.4 202 78.2
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 3.2e-86 322.0 201 78.6
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 1.2e-85 320.1 201 79.1
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 2.1e-85 319.3 201 78.6
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.7e-85 318.9 201 77.1
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 3.6e-85 318.5 210 77.6
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 1.0e-84 317.0 202 75.7
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 1.8e-84 316.2 213 76.1
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.1e-83 313.5 201 76.1
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 9.7e-83 310.5 201 75.1
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 4.8e-82 308.1 201 74.1
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 1.1e-81 307.0 201 74.6
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 1.8e-81 306.2 201 74.1
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 2.4e-81 305.8 201 73.6
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 3.1e-81 305.4 201 79.1
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 5.3e-81 304.7 201 72.6
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 4.5e-80 301.6 201 72.6
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 2.2e-79 299.3 201 71.1
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 5.0e-79 298.1 201 75.6
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 5.0e-79 298.1 201 75.6
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.5e-78 296.6 195 76.4
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 2.7e-77 292.4 201 73.1
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.6e-77 292.0 201 73.1
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.8e-76 289.7 201 70.1
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.4e-73 280.0 201 70.1
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 9.1e-73 277.3 191 71.2
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 2.2e-71 272.7 197 65.5
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 2.9e-71 272.3 204 71.1
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 1.5e-70 270.0 202 64.4
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 2.1e-69 266.2 219 65.3
Psat0s2724g0040 Pisum sativum HOM05D003114 ORTHO05D003519 2.7e-69 265.8 165 77.0
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 8.0e-69 264.2 197 69.0
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 5.2e-68 261.5 202 60.4
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 2.2e-66 256.1 204 60.8
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 2.2e-66 256.1 204 60.8
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 2.2e-66 256.1 164 76.2
Nn6g32173 Nelumbo nucifera HOM05D003114 ORTHO05D003519 7.7e-64 247.7 149 79.9
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 1.4e-52 210.3 201 55.2
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 1.5e-51 206.8 206 51.9
HPP92_006946 Vanilla planifolia HOM05D003114 ORTHO05D003519 2.6e-51 206.1 135 74.1
Glyma.14G078700 Glycine max HOM05D003114 ORTHO05D003519 7.5e-51 204.5 161 68.3
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 6.6e-47 191.4 113 81.4
unitig_26.g9826 Utricularia gibba HOM05D003114 ORTHO05D003519 8.9e-44 181.0 108 78.7
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 1.2e-43 180.6 202 52.0
CBR_g3845 Chara braunii HOM05D003114 ORTHO05D003519 2.3e-39 166.4 200 45.5
Haze_17604 Corylus avellana HOM05D001143 ORTHO05D001457 2.8e-37 159.5 89 88.8
Pp3c11_16180 Physcomitrium patens HOM05D003114 ORTHO05D003519 4.7e-37 158.7 200 39.5
Pp3c1_15530 Physcomitrium patens HOM05D003114 ORTHO05D003519 6.2e-37 158.3 200 40.0
Nn6g32174 Nelumbo nucifera HOM05D003114 ORTHO05D003519 6.8e-36 154.8 93 77.4
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 8.3e-34 147.9 89 77.5
SEGI_30062 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 1.6e-32 143.7 90 74.4
Sopen10g025670 Solanum pennellii HOM05D003114 ORTHO05D003519 3.1e-28 129.4 65 95.4
SEGI_02474 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 6.0e-24 115.2 81 69.1
Cfa002225 Carpinus fangiana HOM05D003114 ORTHO05D003519 2.3e-23 113.2 74 77.0
BolC6t35330H Brassica oleracea HOM05D003114 ORTHO05D003519 5.1e-23 112.1 66 80.3
Sopen10g026900 Solanum pennellii HOM05D003114 ORTHO05D003519 5.6e-22 108.6 54 94.4
CSS0049055 Camellia sinensis var. sinensis HOM05D003114 ORTHO05D003519 9.6e-22 107.8 70 78.6
Cre09.g392000 Chlamydomonas reinhardtii HOM05D003114 ORTHO05D003519 3.6e-21 105.9 202 28.7
Haze_25402 Corylus avellana HOM05D003114 ORTHO05D003519 8.1e-13 78.2 89 55.1


User provided reference genes

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