Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.1e-71 273.1 133 100.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.8e-70 268.5 133 98.5
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.8e-70 268.5 133 98.5
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 3.7e-70 268.1 133 97.7
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.2e-70 267.3 133 97.0
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 8.2e-70 266.9 133 97.7
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.1e-69 266.5 133 97.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.1e-69 266.5 133 97.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.4e-69 266.2 133 97.0
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.1e-69 265.0 133 96.2
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.3e-64 248.8 133 90.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.0e-64 248.4 133 90.2
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 3.9e-64 248.1 133 91.0
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.7e-64 246.9 133 87.2
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 8.7e-64 246.9 133 89.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 8.7e-64 246.9 133 89.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 8.7e-64 246.9 133 89.5
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.9e-63 245.7 130 89.2
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.9e-63 245.7 133 89.5
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.5e-63 245.4 133 89.5
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.5e-63 245.4 133 88.7
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.3e-63 245.0 133 87.2
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.3e-63 245.0 133 88.7
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.3e-63 244.6 133 87.2
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.3e-63 244.6 133 87.2
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 4.3e-63 244.6 128 91.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 5.7e-63 244.2 133 88.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 5.7e-63 244.2 133 87.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.7e-63 244.2 133 88.7
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 5.7e-63 244.2 133 85.7
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 9.7e-63 243.4 133 88.0
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.7e-63 243.4 133 86.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 9.7e-63 243.4 133 88.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.3e-62 243.0 133 88.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.3e-62 243.0 133 86.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.3e-62 243.0 133 86.5
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.2e-62 242.3 133 88.0
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 2.2e-62 242.3 133 86.5
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.2e-62 242.3 133 86.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 2.2e-62 242.3 133 86.5
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.2e-62 242.3 133 85.7
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.8e-62 241.9 133 87.2
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.8e-62 241.9 133 86.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 3.7e-62 241.5 133 87.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.7e-62 241.5 133 87.2
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.7e-62 241.5 133 86.5
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.7e-62 241.5 130 86.9
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 4.8e-62 241.1 133 87.2
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 4.8e-62 241.1 133 85.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 6.3e-62 240.7 133 87.2
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.2e-62 240.4 133 85.7
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 8.2e-62 240.4 133 87.2
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 3.1e-61 238.4 133 85.0
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 3.1e-61 238.4 133 84.2
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 3.1e-61 238.4 132 87.9
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.1e-61 238.0 133 83.5
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 4.1e-61 238.0 133 84.2
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.3e-61 237.7 133 85.7
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.0e-61 236.9 133 85.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.2e-60 236.5 130 86.9
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.0e-60 235.7 134 85.1
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.4e-60 235.0 133 82.7
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.5e-60 234.6 133 83.5
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 5.9e-60 234.2 133 85.0
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 5.9e-60 234.2 133 82.7
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.9e-60 234.2 133 85.0
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.7e-60 233.8 133 83.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 7.7e-60 233.8 134 87.3
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.3e-59 233.0 133 83.5
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.3e-59 233.0 133 83.5
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 2.2e-59 232.3 133 82.0
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.2e-59 232.3 134 86.6
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.9e-59 231.9 133 84.2
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 2.9e-59 231.9 134 86.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.8e-59 231.5 133 82.0
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 5.0e-59 231.1 135 83.7
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 5.0e-59 231.1 135 84.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 8.5e-59 230.3 133 81.2
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 8.5e-59 230.3 130 84.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.1e-58 229.9 133 80.5
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.9e-58 229.2 133 80.5
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.5e-58 228.8 133 81.2
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.2e-58 228.4 133 81.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.2e-58 228.4 135 83.7
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 5.5e-58 227.6 134 82.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 7.2e-58 227.3 133 80.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.2e-57 226.5 133 81.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.6e-57 226.1 126 84.9
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.6e-57 226.1 133 80.5
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 2.7e-57 225.3 128 84.4
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 3.6e-57 224.9 135 82.2
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 7.9e-57 223.8 133 79.7
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.8e-56 222.6 133 78.9
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.8e-56 222.6 133 78.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 5.1e-56 221.1 126 84.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 8.8e-56 220.3 133 78.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.8e-54 214.5 124 81.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.4e-53 212.2 126 80.2
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.5e-52 209.5 129 77.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 2.0e-52 209.1 129 76.0
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.6e-52 208.8 126 78.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 5.9e-52 207.6 133 72.2
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.4e-50 203.0 133 72.9
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.2e-50 201.8 130 73.8
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.2e-50 201.8 133 72.9
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.2e-50 201.8 133 73.7
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 5.5e-50 201.1 126 73.0
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.2e-50 200.7 123 78.0
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-49 199.9 123 77.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.7e-49 198.7 126 75.4
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 6.1e-49 197.6 133 72.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.9e-48 194.9 134 70.9
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.9e-48 194.9 127 72.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.9e-48 194.9 127 72.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 3.3e-47 191.8 126 70.6
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 7.4e-47 190.7 130 69.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.8e-46 188.7 120 72.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.8e-46 188.7 120 72.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 6.3e-46 187.6 128 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.5e-44 183.0 133 67.7
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 4.5e-44 181.4 133 66.9
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.9e-43 178.7 119 70.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.9e-43 178.7 119 70.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.1e-41 172.6 133 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.1e-41 171.0 133 63.9
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 5.3e-37 157.9 112 70.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.0e-35 151.4 121 65.3
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.0e-35 151.4 121 65.3
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.5e-34 147.9 121 63.6
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.4e-32 143.3 85 81.2
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 6.8e-32 141.0 79 83.5
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.5e-31 137.5 78 85.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 7.2e-26 120.9 133 51.1
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.8e-24 114.4 122 52.5
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 8.0e-17 90.9 125 38.4
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 8.9e-16 87.4 63 68.3


User provided reference genes

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