Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 1.0e-54 216.5 105 100.0
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 9.4e-45 183.3 105 85.7
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 4.2e-37 157.9 94 83.0
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 1.2e-36 156.4 94 81.9
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 2.3e-35 152.1 94 79.8
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 4.4e-34 147.9 94 78.7
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 2.0e-31 139.0 94 75.5
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 4.7e-28 127.9 97 67.0
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 5.2e-27 124.4 84 77.4
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 2.6e-26 122.1 82 76.8
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 5.7e-26 120.9 82 74.4
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 5.7e-26 120.9 97 62.9
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 9.7e-26 120.2 80 72.5
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 9.7e-26 120.2 80 72.5
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 9.7e-26 120.2 82 72.0
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 1.7e-25 119.4 96 63.5
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 1.7e-25 119.4 82 72.0
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 1.7e-25 119.4 82 72.0
CSS0038308 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 2.8e-25 118.6 79 72.2
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 2.8e-25 118.6 96 62.5
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 4.8e-25 117.9 96 62.5
CSS0001259 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 8.2e-25 117.1 79 70.9
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 8.2e-25 117.1 82 69.5
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 1.1e-24 116.7 80 71.2
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 1.8e-24 115.9 82 70.7
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 2.4e-24 115.5 80 71.2
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 4.1e-24 114.8 82 70.7
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 4.1e-24 114.8 81 67.9
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 5.3e-24 114.4 96 59.4
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 5.3e-24 114.4 96 60.4
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 7.0e-24 114.0 79 69.6
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 9.1e-24 113.6 82 68.3
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 9.1e-24 113.6 83 67.5
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 9.1e-24 113.6 82 69.5
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 1.6e-23 112.8 82 67.1
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 2.0e-23 112.5 78 70.5
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 2.0e-23 112.5 83 72.3
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 2.0e-23 112.5 96 60.4
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 4.5e-23 111.3 96 58.3
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 4.5e-23 111.3 83 68.7
Cfa002122 Carpinus fangiana HOM05D002593 ORTHO05D006476 5.9e-23 110.9 82 72.0
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 7.7e-23 110.5 82 65.9
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 7.7e-23 110.5 82 67.1
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 1.0e-22 110.2 82 67.1
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 1.3e-22 109.8 96 59.4
CDE02G1715 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 1.7e-22 109.4 94 56.4
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.7e-22 109.4 96 57.3
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 1.7e-22 109.4 83 65.1
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 2.9e-22 108.6 87 63.2
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 2.9e-22 108.6 87 63.2
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 2.9e-22 108.6 96 55.2
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 5.0e-22 107.8 96 56.2
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 5.0e-22 107.8 96 56.2
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 5.0e-22 107.8 96 56.2
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 6.5e-22 107.5 89 62.9
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 6.5e-22 107.5 89 62.9
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 6.5e-22 107.5 89 62.9
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 6.5e-22 107.5 81 64.2
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 8.5e-22 107.1 89 57.3
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 1.5e-21 106.3 84 66.7
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 1.9e-21 105.9 87 60.9
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 2.5e-21 105.5 86 61.6
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 2.5e-21 105.5 90 60.0
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 2.5e-21 105.5 94 58.5
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 3.2e-21 105.1 86 61.6
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 4.2e-21 104.8 88 61.4
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 5.5e-21 104.4 86 60.5
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 9.4e-21 103.6 87 65.5
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 9.4e-21 103.6 87 65.5
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 1.2e-20 103.2 96 56.2
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 1.6e-20 102.8 101 52.5
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 2.7e-20 102.1 83 63.9
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 2.7e-20 102.1 86 62.8
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 2.7e-20 102.1 101 51.5
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 4.7e-20 101.3 83 63.9
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 6.1e-20 100.9 87 64.4
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 8.0e-20 100.5 73 69.9
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 1.0e-19 100.1 87 62.1
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 1.4e-19 99.8 80 63.8
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 3.0e-19 98.6 83 60.2
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 4.0e-19 98.2 81 64.2
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 4.0e-19 98.2 80 60.0
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 5.2e-19 97.8 83 63.9
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 6.8e-19 97.4 94 53.2
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 1.5e-18 96.3 77 61.0
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 2.0e-18 95.9 83 63.9
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 3.4e-18 95.1 84 63.1
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 4.4e-18 94.7 84 63.1
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 5.7e-18 94.4 80 56.2
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 9.8e-18 93.6 73 65.8
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 1.3e-17 93.2 83 60.2
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 2.8e-17 92.0 81 63.0
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 3.7e-17 91.7 84 58.3
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 4.8e-17 91.3 84 59.5
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 6.3e-17 90.9 81 58.0
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 6.3e-17 90.9 84 60.7
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 8.3e-17 90.5 81 63.0
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 4.1e-16 88.2 95 51.6
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 1.9e-13 79.3 45 80.0
Haze_16323 Corylus avellana HOM05D002593 ORTHO05D006476 9.5e-13 77.0 58 72.4
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 1.2e-12 76.6 85 56.5
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.2e-12 76.6 85 56.5
FAN26G1490 Fragaria x ananassa HOM05D002593 ORTHO05D006476 3.6e-12 75.1 54 66.7
Actinidia20056 Actinidia chinensis HOM05D002593 ORTHO05D006476 4.7e-12 74.7 40 85.0
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 4.7e-12 74.7 76 56.6
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.2e-07 60.1 73 47.9
HPP92_025044 Vanilla planifolia HOM05D002593 ORTHO05D006476 2.7e-07 58.9 45 60.0
SEGI_39457 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 4.5e-07 58.2 31 77.4
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 1.0e-06 57.0 27 96.3


User provided reference genes

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