Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1483.8 769 100.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1459.9 772 98.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1454.1 772 97.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1371.3 777 90.3
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1348.6 818 86.7
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1305.0 789 86.2
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1250.0 705 92.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1212.2 730 83.8
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1209.1 781 80.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1208.7 767 80.8
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1208.4 771 80.7
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1206.8 774 80.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1204.1 772 79.9
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1198.0 774 79.3
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1182.5 761 80.0
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1172.9 792 77.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1171.8 731 81.5
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1167.5 770 78.8
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1166.8 776 78.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1166.8 775 77.2
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 792 77.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 778 77.8
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1165.2 792 77.7
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1162.1 783 76.1
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1161.0 779 77.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1157.1 756 78.3
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1156.0 783 77.5
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1153.3 784 76.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1152.5 786 75.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1150.2 740 79.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1149.4 777 76.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1149.4 774 77.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 751 78.0
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1144.8 697 82.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1142.9 767 76.5
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1136.7 770 77.0
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1136.3 733 78.6
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1135.6 780 74.9
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1131.7 790 74.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1130.9 719 80.8
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1128.2 770 76.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1127.9 775 75.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1126.7 757 75.8
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1125.2 727 78.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1124.0 737 77.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 717 79.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1108.6 747 75.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1106.7 791 72.2
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1104.4 773 75.5
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1096.3 791 72.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1091.3 770 73.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 729 75.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 771 71.6
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1076.2 796 71.9
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 5.3e-312 1074.3 765 73.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.6e-311 1071.6 766 73.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.3e-310 1068.5 781 71.4
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 3.1e-310 1068.1 841 68.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 760 73.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 3.4e-309 1064.7 767 72.9
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.4e-309 1064.3 744 73.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 5.7e-309 1063.9 800 70.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.7e-308 1062.4 652 83.0
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.7e-308 1061.2 783 73.4
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 778 72.9
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 783 72.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 769 71.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 779 72.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 778 72.6
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 727 74.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 727 74.6
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 772 72.4
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 777 71.3
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 726 74.4
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 779 72.3
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.0e-302 1043.1 773 71.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.0e-302 1043.1 753 71.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 771 70.8
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 778 71.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 7.5e-301 1036.9 768 72.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 9.8e-301 1036.6 778 71.7
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.3e-300 1036.2 768 71.9
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 776 70.2
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.2e-299 1031.6 767 71.3
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.1e-299 1031.2 779 69.2
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 5.4e-299 1030.8 767 71.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.2e-299 1030.0 679 77.5
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 757 71.3
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.0e-298 1027.3 764 70.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 730 72.1
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 6.8e-294 1013.8 760 71.4
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.0e-293 1012.3 775 67.7
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 5.8e-293 1010.7 692 75.0
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 9.8e-293 1010.0 771 68.2
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.9e-288 995.7 740 72.0
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.3e-288 994.6 699 73.8
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.7e-247 858.6 631 73.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 9.0e-246 854.0 560 75.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.2e-245 853.6 560 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.3e-244 850.1 725 60.8
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.4e-238 830.1 751 60.3
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.6e-234 815.5 731 57.6
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.1e-230 803.9 714 59.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-226 790.0 544 68.4
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 4.7e-226 788.5 725 57.7
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.2e-219 765.4 531 68.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.6e-216 756.1 573 65.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-203 714.1 512 67.8
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.0e-193 679.5 414 79.5
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.6e-176 623.2 403 77.7
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-170 604.0 414 69.3
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 9.9e-152 541.6 343 78.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.2e-130 470.7 269 82.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 5.3e-105 386.3 693 36.9
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 2.9e-103 380.6 295 68.5
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 4.7e-101 373.2 491 43.6
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.3e-98 365.2 271 66.1
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 4.0e-92 343.6 624 41.0
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.7e-87 328.2 277 66.4
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.3e-71 274.6 351 48.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 4.3e-70 270.4 642 31.8
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.5e-43 182.2 99 84.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.6e-35 154.8 83 83.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.4e-34 149.8 139 59.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.4e-33 147.1 109 68.8
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 4.9e-26 124.0 118 59.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 9.3e-25 119.8 140 46.4
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.2e-21 107.1 54 85.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 6.0e-16 90.5 103 46.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.0e-15 89.7 147 38.8
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.4e-12 78.6 81 55.6
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-12 78.6 74 60.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.3e-10 72.8 41 80.5
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.2e-09 68.2 398 23.1
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 6.1e-08 63.9 315 24.4
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 7.9e-08 63.5 323 23.2
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 1.4e-07 62.8 270 26.3
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.3e-07 62.0 80 43.8
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 3.0e-07 61.6 410 23.2
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.9e-07 61.2 347 25.6
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 2.0e-06 58.9 258 24.8
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.5e-06 58.5 363 25.6
MD12G1063100 Malus domestica HOM05D008447 ORTHO05D010638 2.5e-06 58.5 281 26.7
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 5.7e-06 57.4 64 53.1
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 5.7e-06 57.4 85 38.8
Aqoxy1G00302 Aquilegia oxysepala HOM05D008447 ORTHO05D010638 9.7e-06 56.6 263 25.5
Cfa016881 Carpinus fangiana HOM05D008447 ORTHO05D010638 9.7e-06 56.6 296 24.0


User provided reference genes

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