Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.3e-131 473.0 238 100.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 5.5e-125 451.1 238 95.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.3e-105 386.7 242 82.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.8e-102 375.2 242 79.3
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.5e-102 374.0 242 78.5
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.7e-100 368.2 241 79.7
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.8e-94 348.6 243 74.9
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.3e-86 323.6 210 81.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.9e-86 322.4 210 81.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.0e-82 309.7 154 96.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.5e-77 292.7 238 61.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.5e-77 291.6 242 60.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-76 290.4 241 61.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.6e-74 282.7 241 59.3
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 3.7e-73 278.9 242 59.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.8e-72 276.6 237 57.4
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 3.1e-72 275.8 241 58.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.7e-71 272.7 237 58.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.7e-71 271.2 236 55.9
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.0e-70 270.8 227 62.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.7e-70 270.0 237 57.8
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.2e-69 265.4 236 55.9
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 5.5e-69 265.0 241 57.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 9.5e-69 264.2 243 57.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-67 260.4 230 55.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 5.2e-67 258.5 239 54.4
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 9.8e-66 254.2 227 53.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.3e-65 251.1 231 53.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.4e-64 250.4 238 51.3
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-64 250.0 239 52.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.1e-64 249.2 238 51.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.2e-63 247.3 234 52.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.2e-63 247.3 234 53.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.6e-63 246.9 239 52.3
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 5.9e-63 245.0 234 52.1
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 7.8e-63 244.6 210 53.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.0e-62 244.2 238 50.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.9e-62 242.7 240 52.5
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.8e-62 242.3 229 52.4
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 6.6e-62 241.5 238 49.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 6.6e-62 241.5 203 58.6
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.5e-61 240.4 198 56.6
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.5e-61 240.4 236 50.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.9e-61 240.0 234 53.0
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 7.3e-61 238.0 236 50.8
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 9.5e-61 237.7 238 50.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-60 237.3 238 51.3
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.6e-60 235.7 230 50.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.6e-60 235.7 239 49.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.7e-60 235.3 226 48.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.7e-60 235.3 225 51.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.0e-60 234.6 239 49.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.0e-59 234.2 237 48.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.0e-59 234.2 238 49.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.0e-59 234.2 225 51.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-59 233.8 238 49.2
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.1e-59 232.6 225 51.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.0e-59 232.3 226 49.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 4.0e-59 232.3 226 50.0
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 4.0e-59 232.3 239 48.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.2e-59 231.9 238 48.7
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-58 230.7 226 48.2
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.4e-58 229.2 237 49.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.4e-58 228.8 238 49.2
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.4e-58 228.8 238 51.7
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 7.5e-58 228.0 242 46.3
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 9.8e-58 227.6 229 49.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 6.4e-57 224.9 227 51.5
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.1e-56 224.2 231 50.6
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.1e-56 222.2 198 53.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 7.0e-56 221.5 236 44.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.0e-56 221.5 228 46.1
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 7.0e-56 221.5 240 48.8
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.0e-56 221.5 228 47.8
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.2e-55 220.7 236 46.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.0e-55 218.4 238 46.2
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-54 216.9 235 44.7
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-54 216.9 235 44.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-54 216.5 235 44.7
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.0e-54 216.1 242 45.9
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.0e-54 216.1 235 44.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.6e-54 214.9 235 44.3
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 4.3e-53 212.2 242 45.0
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.6e-53 211.8 243 45.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.6e-53 211.8 243 45.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 7.3e-53 211.5 230 47.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.5e-53 211.1 237 45.1
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.1e-52 209.9 226 46.0
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 4.7e-52 208.8 234 45.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.2e-52 208.4 236 44.1
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.8e-51 206.8 227 45.4
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.5e-50 203.8 230 44.8
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-49 200.3 236 44.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.2e-49 199.9 231 45.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 6.4e-49 198.4 244 42.6
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.1e-47 193.4 230 43.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.7e-47 193.0 204 47.5
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 3.5e-47 192.6 234 44.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.5e-47 192.6 235 41.7
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 4.6e-47 192.2 148 65.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 4.6e-47 192.2 234 43.2
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.3e-46 190.7 214 47.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 3.0e-46 189.5 234 41.9
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.9e-46 189.1 235 41.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 5.1e-46 188.7 231 42.0
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 5.1e-46 188.7 231 42.0
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 8.6e-46 188.0 240 44.6
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-45 187.6 165 55.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-45 187.2 236 41.1
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.9e-45 186.8 235 41.7
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.3e-45 184.9 231 40.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 9.5e-45 184.5 237 44.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.2e-44 184.1 172 50.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.1e-44 183.3 229 43.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.8e-44 183.0 230 40.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-44 182.6 230 40.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 3.6e-44 182.6 230 40.0
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.6e-44 182.6 211 46.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 3.6e-44 182.6 169 56.2
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 8.1e-44 181.4 151 57.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.1e-43 181.0 144 61.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.8e-43 180.3 230 42.2
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.1e-43 179.5 231 43.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.1e-43 179.5 217 39.2
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.0e-43 179.1 152 57.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 5.2e-43 178.7 201 40.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-42 177.2 192 45.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.4e-42 176.0 230 39.6
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.4e-42 175.6 229 41.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 7.5e-42 174.9 230 40.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 7.5e-42 174.9 228 39.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.7e-41 173.7 237 38.8
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.9e-41 172.9 230 40.4
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.9e-41 172.9 222 43.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-40 170.6 224 44.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 7.1e-40 168.3 223 43.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.1e-39 166.8 222 42.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.7e-39 166.4 232 40.1
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-38 163.3 228 41.2
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-38 162.2 237 40.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 5.1e-38 162.2 175 43.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.5e-37 160.6 151 49.0
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-37 159.5 215 39.1
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 4.3e-37 159.1 230 41.7
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 4.3e-37 159.1 230 41.7
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.8e-36 156.4 215 38.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.6e-36 156.0 207 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.1e-35 154.5 217 36.4
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.4e-35 153.3 192 41.7
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.3e-33 147.5 216 35.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.9e-33 146.4 229 38.4
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.9e-33 145.6 194 37.1
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 7.8e-31 138.3 238 34.5
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 8.7e-30 134.8 216 35.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.6e-29 131.3 216 36.1
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.1e-28 128.3 98 65.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 8.1e-28 128.3 143 47.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.5e-26 124.0 110 54.5
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-25 120.2 138 42.8
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.1e-23 113.6 113 49.6
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.7e-23 113.2 77 66.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.7e-22 108.2 207 32.9
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 4.8e-20 102.4 101 64.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.8e-19 100.5 122 44.3
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.1e-19 99.8 134 41.8
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.1e-19 99.8 145 39.3
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 3.1e-19 99.8 160 35.0
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.0e-19 98.2 92 46.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.7e-17 94.0 199 32.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.9e-17 93.2 111 42.3
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 78 55.1
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 3.5e-15 86.3 74 50.0
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.7e-14 82.0 96 44.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.5e-13 80.1 76 46.1
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.6e-13 79.0 51 76.5
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.8e-11 73.9 58 56.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.9e-11 72.0 99 37.4
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 6.9e-11 72.0 99 37.4
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-09 67.0 94 35.1
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.9e-09 66.6 65 46.2


User provided reference genes

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