Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.1e-81 307.0 201 100.0
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.1e-77 291.2 199 72.4
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.7e-74 283.1 199 72.4
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 7.7e-72 274.2 199 66.8
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.7e-66 256.5 199 63.8
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 3.7e-66 255.4 199 63.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.3e-66 254.6 200 62.5
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 6.3e-66 254.6 199 62.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.3e-66 254.6 199 64.8
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.4e-65 252.7 199 61.3
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.1e-65 252.3 193 65.3
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 3.1e-65 252.3 193 65.3
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-64 250.4 204 62.3
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.0e-64 249.6 199 61.8
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 3.5e-64 248.8 207 60.9
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 4.5e-64 248.4 199 61.3
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.9e-64 248.1 199 62.8
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 5.9e-64 248.1 199 61.8
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.3e-63 246.1 199 58.8
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.3e-63 246.1 201 58.2
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.9e-63 245.7 201 58.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 3.8e-63 245.4 193 62.7
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 5.0e-63 245.0 200 60.5
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.0e-63 245.0 199 61.3
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.6e-63 244.6 199 60.8
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.5e-62 242.7 199 58.3
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.3e-62 242.3 197 59.4
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.3e-62 242.3 192 61.5
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.2e-62 241.9 199 58.3
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.2e-62 241.9 200 59.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.5e-62 241.5 199 58.3
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.5e-62 241.5 184 87.0
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.6e-61 240.0 199 59.3
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.6e-61 240.0 197 58.9
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.8e-61 239.2 199 58.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.6e-61 238.8 199 58.8
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.6e-61 238.8 199 57.8
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.7e-61 238.4 198 58.6
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 6.1e-61 238.0 201 58.2
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 6.1e-61 238.0 201 55.7
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 8.0e-61 237.7 199 58.3
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.4e-60 236.9 203 60.1
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.8e-60 236.5 202 56.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.3e-60 236.1 206 56.3
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.3e-60 236.1 219 56.2
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 5.2e-60 235.0 199 56.3
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 6.8e-60 234.6 206 55.8
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.8e-60 234.6 199 58.3
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 6.8e-60 234.6 196 56.1
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-59 233.8 201 55.2
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-59 233.8 201 55.2
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.5e-59 233.4 197 58.4
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.0e-59 233.0 199 53.8
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 2.0e-59 233.0 193 58.0
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 5.7e-59 231.5 196 58.2
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.7e-59 231.5 199 59.8
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 7.5e-59 231.1 199 53.8
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 9.8e-59 230.7 174 78.2
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 9.8e-59 230.7 205 54.6
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 9.8e-59 230.7 203 55.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.2e-58 229.6 195 55.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 6.3e-58 228.0 195 55.9
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 6.3e-58 228.0 203 55.7
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 8.3e-58 227.6 202 53.0
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.1e-57 227.3 203 55.7
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.4e-57 226.1 203 54.2
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.1e-57 225.3 201 53.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 5.4e-57 224.9 191 58.1
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 1.6e-56 223.4 200 59.0
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.6e-56 223.4 201 52.2
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.0e-56 223.0 200 54.0
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.7e-56 222.6 194 53.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.9e-56 221.5 203 54.7
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.3e-55 220.3 199 51.3
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.7e-55 219.9 279 45.5
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.3e-55 219.5 202 66.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.3e-55 219.5 199 54.8
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 5.0e-55 218.4 191 56.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 6.6e-55 218.0 111 85.6
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 8.6e-55 217.6 204 50.0
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.1e-54 217.2 204 50.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.5e-54 216.1 199 52.3
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 4.3e-54 215.3 185 56.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.6e-53 213.4 112 85.7
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.6e-53 212.2 111 82.0
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 4.7e-53 211.8 196 51.0
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 6.1e-53 211.5 196 53.1
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 8.0e-53 211.1 204 48.5
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.4e-52 210.3 188 53.7
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.4e-52 210.3 196 53.1
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.8e-52 209.9 191 52.4
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-52 209.5 194 54.6
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 6.8e-52 208.0 204 48.5
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 6.8e-52 208.0 201 49.3
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 8.9e-52 207.6 196 51.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 8.9e-52 207.6 195 51.3
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 2.0e-51 206.5 197 49.7
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 9.8e-51 204.1 203 50.7
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.9e-50 202.6 201 61.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 6.4e-50 201.4 192 51.0
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 8.3e-50 201.1 198 49.5
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 8.3e-50 201.1 198 49.5
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 1.1e-49 200.7 198 49.5
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-49 200.3 198 48.5
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.4e-49 199.5 272 42.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.2e-49 199.1 196 49.0
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 4.1e-49 198.7 198 49.0
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 7.0e-49 198.0 111 74.8
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-48 196.8 201 47.8
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-48 196.8 201 47.8
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 2.0e-48 196.4 194 49.5
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 4.6e-48 195.3 182 51.6
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 3.9e-47 192.2 180 73.9
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 5.0e-47 191.8 182 51.1
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 5.0e-47 191.8 183 51.9
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 5.0e-47 191.8 182 51.1
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.0e-47 191.8 108 73.1
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 6.6e-47 191.4 205 47.8
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 3.3e-46 189.1 179 51.4
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 3.6e-45 185.7 211 55.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 4.0e-44 182.2 166 66.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 9.2e-41 171.0 191 42.9
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 2.1e-40 169.9 162 52.5
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.6e-40 168.7 207 39.1
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.3e-39 167.2 201 49.8
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.7e-39 166.8 214 44.9
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 3.3e-38 162.5 200 44.0
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 5.6e-38 161.8 186 50.0
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.6e-37 160.2 155 50.3
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.1e-36 157.5 194 39.2
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.1e-36 156.0 156 48.1
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.2e-35 154.1 196 40.3
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.0e-35 153.3 195 41.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.0e-35 153.3 198 40.9
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.0e-35 153.3 189 38.6
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 3.7e-34 149.1 193 44.0
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 3.7e-34 149.1 193 44.0
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 4.9e-34 148.7 153 49.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.1e-33 147.5 193 44.0
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.4e-33 146.4 187 41.7
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.1e-32 143.3 158 45.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.3e-31 140.6 185 36.2
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 3.0e-31 139.4 141 49.6
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 5.1e-31 138.7 112 63.4
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 6.6e-31 138.3 191 37.2
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.9e-30 136.7 188 41.0
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 7.3e-30 134.8 138 48.6
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.7e-26 123.6 187 40.1
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 7.1e-25 118.2 133 46.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.0e-24 115.2 200 33.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.0e-23 114.4 200 33.0
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-20 104.0 134 41.0
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.3e-18 97.4 51 76.5
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.7e-18 97.1 51 80.4
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.7e-16 89.7 70 60.0
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.6e-11 71.6 49 55.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 7.6e-11 71.6 156 30.8
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 3.2e-09 66.2 39 69.2
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.2e-08 64.3 113 29.2
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 2.7e-08 63.2 131 26.7
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 4.6e-08 62.4 131 28.2
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 4.6e-08 62.4 138 28.3
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 6.0e-08 62.0 110 29.1
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 1.3e-07 60.8 146 30.1
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.3e-07 60.8 110 29.1
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 1.8e-07 60.5 131 27.5
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 2.3e-07 60.1 131 28.2
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 3.9e-07 59.3 92 33.7
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 1.9e-06 57.0 137 26.3
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 4.3e-06 55.8 109 31.2


User provided reference genes

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