Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.1e-295 1019.2 536 100.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 6.9e-285 983.4 536 96.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.3e-254 882.9 536 88.6
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 3.1e-253 878.2 536 86.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.0e-247 859.0 570 80.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 1.8e-245 852.4 536 85.4
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 6.8e-224 780.8 536 78.7
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 1.9e-178 629.8 546 65.6
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.9e-171 605.5 547 63.3
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 2.8e-169 599.4 543 62.4
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 1.1e-168 597.4 552 61.6
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 1.8e-168 596.7 546 62.3
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 3.1e-168 595.9 542 62.0
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 1.7e-166 590.1 552 62.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 1.7e-166 590.1 534 62.0
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 8.4e-166 587.8 536 61.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 3.5e-164 582.4 542 61.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 4.6e-164 582.0 536 61.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 6.0e-164 581.6 538 61.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 7.9e-164 581.3 538 61.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.3e-163 580.5 546 61.4
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 2.3e-163 579.7 545 60.6
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 3.9e-163 578.9 538 61.2
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 8.7e-163 577.8 531 61.2
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 4.8e-161 572.0 544 59.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 6.2e-161 571.6 533 62.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 3.1e-160 569.3 545 60.0
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.2e-159 567.4 545 60.4
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 5.8e-159 565.1 539 59.2
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 7.6e-159 564.7 533 60.6
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 7.6e-159 564.7 533 60.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 1.0e-158 564.3 538 58.9
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 2.5e-157 559.7 543 59.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 5.5e-157 558.5 559 58.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.5e-157 558.5 538 58.9
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 7.1e-157 558.1 537 59.6
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 2.7e-156 556.2 568 57.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 2.7e-156 556.2 539 60.9
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 6.0e-156 555.1 545 59.4
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 7.9e-156 554.7 537 58.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 2.3e-155 553.1 558 59.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 3.9e-155 552.4 539 59.4
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 5.1e-155 552.0 538 58.7
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 6.7e-155 551.6 538 58.6
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 8.7e-155 551.2 539 58.8
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 1.5e-154 550.4 544 59.9
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 2.5e-154 549.7 551 58.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 3.3e-154 549.3 558 58.6
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-154 548.9 545 59.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 2.1e-153 546.6 554 57.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 2.8e-153 546.2 556 57.2
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 3.7e-153 545.8 560 58.4
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 6.3e-153 545.0 543 58.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 8.2e-153 544.7 539 58.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 1.4e-152 543.9 547 58.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 1.4e-152 543.9 547 58.3
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 5.3e-152 542.0 558 57.2
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 6.9e-152 541.6 541 59.0
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 9.0e-152 541.2 571 56.9
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 2.0e-151 540.0 537 58.7
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 2.0e-151 540.0 550 57.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 3.4e-151 539.3 541 57.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 3.4e-151 539.3 535 58.5
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 2.2e-150 536.6 539 57.5
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 5.0e-150 535.4 546 58.4
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 6.5e-150 535.0 536 57.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 8.5e-150 534.6 539 59.0
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 1.9e-149 533.5 550 57.6
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 9.3e-149 531.2 555 56.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 7.9e-148 528.1 540 57.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 6.3e-145 518.5 537 54.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 8.2e-145 518.1 537 56.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 8.2e-145 518.1 540 56.1
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 1.2e-143 514.2 537 54.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 1.5e-143 513.8 537 55.9
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 2.0e-143 513.5 556 53.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 2.6e-143 513.1 556 54.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 5.9e-143 511.9 541 55.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 1.0e-142 511.1 561 52.9
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 1.7e-142 510.4 558 53.9
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 1.7e-142 510.4 563 53.8
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 2.2e-142 510.0 558 53.2
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 2.2e-142 510.0 558 54.1
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 2.9e-142 509.6 534 57.1
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 1.4e-141 507.3 535 55.3
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.4e-141 504.6 532 55.8
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.6e-140 503.8 562 53.0
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 8.8e-139 498.0 503 58.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 2.0e-135 486.9 546 54.8
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 7.7e-135 485.0 586 52.7
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 1.0e-134 484.6 543 54.1
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.9e-125 453.8 538 52.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 5.7e-122 442.2 453 57.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 8.3e-113 411.8 480 53.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 3.5e-111 406.4 618 45.1
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.9e-109 400.6 605 44.8
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 3.4e-106 389.8 607 42.8
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-96 358.2 520 46.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.4e-96 355.9 543 42.7
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 2.0e-82 310.8 439 49.4
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 8.6e-78 295.4 624 35.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 8.6e-78 295.4 284 59.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.4e-75 288.1 223 69.1
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.2e-74 285.0 330 52.4
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.9e-73 279.6 252 61.5
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.4e-72 276.2 355 48.5
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.7e-63 247.3 185 69.2
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.0e-54 217.2 239 52.7
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.7e-54 215.7 236 53.4
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-49 201.4 157 64.3
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.3e-48 195.7 122 76.2
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.1e-40 172.2 180 55.6
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.3e-37 160.6 85 82.4
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.8e-36 157.5 92 76.1
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 5.1e-30 136.7 541 27.0
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.9e-29 134.8 122 57.4
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.3e-27 126.7 176 43.2
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.9e-27 126.3 223 39.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.2e-23 115.5 71 81.7
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 3.0e-22 110.9 85 64.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.1e-19 100.9 103 53.4
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 6.9e-19 99.8 257 34.2
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.3e-17 95.5 176 44.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 3.8e-17 94.0 257 33.9
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 6.5e-17 93.2 257 33.9
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.2e-16 90.5 257 33.5
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.1e-15 86.7 91 45.1
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 6.7e-14 83.2 483 24.6
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 8.8e-06 56.2 47 63.8


User provided reference genes

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