Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.5e-181 638.6 323 100.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.6e-175 619.4 316 98.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.7e-166 589.3 323 91.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 8.6e-166 587.0 316 91.8
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-162 575.5 316 91.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.8e-150 536.2 316 85.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.8e-140 502.3 322 78.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.4e-139 500.0 325 76.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 9.0e-139 497.3 322 77.6
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.4e-138 495.4 321 76.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.0e-137 493.8 323 75.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.5e-136 488.0 325 74.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.6e-135 485.0 315 76.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.0e-134 483.8 313 78.3
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.0e-134 482.3 310 75.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-133 479.9 311 76.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.2e-132 474.2 308 76.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.4e-131 472.6 308 76.9
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.1e-131 472.2 312 75.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.3e-131 471.5 308 76.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.9e-131 471.1 312 74.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.0e-130 469.5 308 75.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.6e-130 467.6 307 76.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.0e-129 467.2 311 74.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.2e-129 466.1 320 73.4
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.2e-129 466.1 307 76.2
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.2e-129 466.1 315 75.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.9e-129 465.7 311 74.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.8e-129 465.3 335 71.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 8.5e-129 464.2 326 70.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-128 463.8 314 74.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.5e-128 462.6 306 75.8
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.5e-128 462.6 315 74.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 4.2e-128 461.8 311 74.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.2e-128 461.8 307 74.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.2e-128 461.8 307 74.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.2e-128 461.1 316 73.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.6e-127 459.9 313 72.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-127 459.9 313 74.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-127 459.5 315 73.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.6e-127 458.8 310 72.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 7.9e-127 457.6 308 73.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.9e-127 457.6 312 72.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 7.9e-127 457.6 311 74.3
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.9e-127 457.6 352 66.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.3e-126 456.8 307 74.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.8e-126 456.4 307 75.2
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.8e-126 456.4 307 73.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.0e-126 455.7 316 71.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.0e-126 455.7 316 71.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.0e-126 455.7 307 73.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.0e-126 455.7 308 72.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.9e-126 455.3 315 72.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.7e-126 454.1 315 73.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.1e-125 453.8 307 73.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.1e-125 453.8 307 73.3
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-125 453.8 325 71.7
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.3e-125 452.2 323 71.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.3e-125 451.8 313 71.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.8e-124 449.1 310 72.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.7e-124 448.7 312 72.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.7e-124 448.7 310 72.6
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 6.3e-124 448.0 311 72.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-123 446.4 307 73.6
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.4e-123 446.0 307 72.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-122 443.4 291 76.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.0e-122 443.0 315 70.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.6e-122 442.6 307 72.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.6e-122 442.6 315 70.2
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.4e-122 442.2 311 70.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.4e-122 442.2 314 69.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.7e-122 441.0 315 70.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.0e-121 440.7 307 69.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.3e-121 440.3 307 70.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-121 440.3 307 71.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.3e-121 440.3 308 71.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-121 440.3 307 73.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-121 439.9 312 69.6
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 5.0e-121 438.3 312 68.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.0e-121 438.3 312 70.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 8.5e-121 437.6 320 67.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 8.5e-121 437.6 308 72.1
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-120 437.2 307 69.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.9e-120 436.4 315 69.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.5e-120 436.0 311 70.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.2e-120 435.6 314 70.1
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.2e-120 435.6 308 69.2
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.2e-120 435.6 307 71.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.2e-120 435.3 313 68.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.2e-120 435.3 323 68.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.2e-120 435.3 317 69.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.5e-120 434.9 307 69.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.4e-120 434.1 311 70.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 9.4e-120 434.1 308 68.8
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 9.4e-120 434.1 330 68.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.2e-119 433.7 307 68.7
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.2e-119 433.7 307 69.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-119 433.0 308 68.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-119 433.0 308 68.8
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.1e-119 433.0 307 69.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.1e-119 433.0 343 65.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.7e-119 432.6 308 68.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.6e-119 432.2 315 67.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.6e-119 431.8 340 65.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 6.1e-119 431.4 308 68.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.9e-119 431.0 310 70.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 7.9e-119 431.0 328 66.5
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.4e-118 430.3 350 66.3
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.3e-118 429.5 314 69.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.9e-118 428.7 317 69.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.7e-117 424.9 313 68.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.8e-116 422.5 308 67.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.8e-116 421.8 307 69.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-115 420.6 315 67.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.1e-115 418.7 308 68.8
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.1e-115 418.7 308 68.5
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-113 414.1 308 69.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.7e-113 413.3 315 67.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-112 410.2 311 66.9
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 4.7e-111 405.2 312 66.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.3e-110 402.9 314 65.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.2e-110 401.7 368 58.4
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.2e-110 401.7 317 62.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.1e-107 394.0 510 46.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 7.7e-106 387.9 247 76.5
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.2e-105 386.3 253 75.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.5e-104 382.9 312 63.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.5e-101 373.6 262 72.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.8e-99 366.7 185 98.9
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.8e-97 359.0 248 73.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 8.5e-97 357.8 255 67.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 8.3e-92 341.3 313 57.8
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.5e-90 335.5 308 55.2
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.9e-89 332.8 206 79.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-86 323.2 209 74.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.0e-85 320.1 309 52.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 9.2e-83 311.2 216 73.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.5e-82 309.3 207 73.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.0e-81 307.8 209 74.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.1e-79 298.5 282 54.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 3.0e-78 296.2 262 61.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 8.9e-78 294.7 262 61.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-69 267.7 161 82.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-65 252.7 164 74.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.1e-62 244.6 369 41.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.3e-60 237.7 162 71.6
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.8e-55 219.9 164 67.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.4e-54 216.9 144 75.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-51 207.6 151 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.2e-51 206.5 254 47.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.1e-50 203.8 148 68.2
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.9e-43 180.6 287 42.5
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.0e-41 174.9 124 69.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 9.3e-35 151.8 146 54.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.5e-32 144.4 258 36.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.6e-26 124.4 230 36.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.6e-26 124.4 341 32.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-25 119.4 94 66.0
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.5e-24 117.9 112 52.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-24 117.1 61 88.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.3e-22 109.4 121 49.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-18 97.4 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.3e-14 82.8 56 73.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.5e-12 75.5 53 69.8
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.2e-11 73.6 86 46.5
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.8e-06 57.8 45 62.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.1e-06 57.0 46 63.0


User provided reference genes

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