Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.0e-177 624.8 316 100.0
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 4.3e-171 604.7 316 96.8
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.1e-170 602.4 316 96.5
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.8e-156 556.2 311 90.0
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 6.5e-151 537.7 316 85.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.1e-147 526.9 314 83.4
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.0e-144 516.2 316 80.1
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 4.5e-144 515.0 311 81.7
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.0e-143 513.8 296 86.8
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.9e-143 512.3 316 80.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.1e-142 510.4 316 80.7
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.5e-142 509.2 319 79.9
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 5.5e-142 508.1 316 78.8
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.6e-141 506.5 315 79.0
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 7.9e-141 504.2 320 78.8
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.9e-141 504.2 303 81.8
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.4e-140 503.4 313 80.5
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.9e-140 501.9 317 77.6
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 6.7e-140 501.1 309 80.6
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 6.7e-140 501.1 317 78.5
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.1e-139 500.4 316 76.3
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.0e-139 499.6 303 81.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 2.0e-139 499.6 316 78.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 3.3e-139 498.8 317 77.9
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 5.7e-139 498.0 317 78.5
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.3e-138 496.9 317 78.2
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.3e-138 496.9 316 78.2
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.2e-138 496.1 316 78.5
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.7e-138 495.4 311 80.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.8e-138 495.0 315 78.1
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 4.8e-138 495.0 313 78.0
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 6.3e-138 494.6 303 80.5
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.4e-137 493.4 317 78.2
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.4e-137 493.4 314 77.7
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.8e-137 493.0 315 77.8
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.8e-137 493.0 317 77.6
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.8e-137 493.0 315 78.1
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.8e-137 493.0 312 78.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.8e-137 493.0 321 77.3
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.8e-137 493.0 313 78.0
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.4e-137 492.7 315 75.6
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 3.1e-137 492.3 303 79.5
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.1e-137 491.9 315 78.1
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 6.9e-137 491.1 322 77.0
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 5.9e-136 488.0 310 77.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.7e-135 486.5 325 75.4
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.7e-135 486.5 314 79.0
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.7e-135 486.5 360 69.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.7e-135 486.5 313 77.6
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.7e-135 486.5 351 71.5
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 2.2e-135 486.1 315 77.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-135 485.3 318 77.7
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.5e-135 484.2 318 77.7
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.1e-134 483.8 318 76.7
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.5e-134 482.6 318 76.7
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 4.2e-134 481.9 318 77.7
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 9.4e-134 480.7 323 76.5
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 9.4e-134 480.7 323 76.5
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 9.4e-134 480.7 323 76.5
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.2e-133 480.3 311 77.8
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 7.9e-133 477.6 323 74.6
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.0e-132 477.2 302 80.1
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.4e-132 476.9 313 77.0
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.4e-132 476.9 318 77.0
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.8e-132 476.5 312 76.9
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 2.3e-132 476.1 323 75.9
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.0e-132 475.7 311 77.2
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 5.1e-132 474.9 319 75.2
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 5.1e-132 474.9 319 75.2
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 6.7e-132 474.6 318 75.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 6.7e-132 474.6 318 75.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 6.7e-132 474.6 318 75.5
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 8.8e-132 474.2 323 75.5
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.1e-131 473.8 316 75.3
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 9.7e-131 470.7 313 75.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 4.1e-129 465.3 298 77.5
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.2e-128 463.8 299 77.9
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-128 463.4 316 73.7
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.6e-128 462.6 312 74.0
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-127 459.1 316 73.4
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 3.2e-126 455.7 333 71.5
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 9.4e-126 454.1 314 72.9
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.1e-125 453.0 314 74.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 2.1e-125 453.0 315 72.4
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.7e-125 452.6 313 72.8
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.7e-125 452.6 322 73.3
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 8.0e-125 451.1 301 74.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-124 450.3 314 73.9
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.8e-124 449.9 320 72.8
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 2.3e-124 449.5 299 75.6
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 8.8e-124 447.6 309 74.8
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 4.4e-123 445.3 322 71.1
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.4e-123 445.3 322 71.1
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 5.7e-123 444.9 316 71.2
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.7e-122 443.4 308 75.0
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.7e-122 443.4 324 70.1
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 3.7e-122 442.2 317 71.3
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.3e-122 441.4 327 70.0
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.4e-121 440.3 323 71.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 4.1e-121 438.7 314 72.6
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 9.1e-121 437.6 327 69.4
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 9.1e-121 437.6 305 74.1
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.6e-120 436.0 295 75.3
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.8e-119 432.2 260 81.9
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.1e-118 430.6 326 68.7
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 6.3e-114 414.8 266 76.3
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.0e-112 409.8 301 70.1
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.7e-109 398.7 319 67.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 7.5e-107 391.3 303 68.6
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.2e-104 384.0 315 61.0
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.3e-102 375.9 292 69.5
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 4.2e-102 375.6 257 73.2
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.8e-101 372.9 284 63.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.3e-100 369.8 295 63.4
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.2e-99 367.5 308 61.7
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 9.8e-99 364.4 228 79.8
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 3.7e-98 362.5 231 77.5
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.1e-97 360.9 273 63.0
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.1e-97 360.9 230 77.4
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.2e-97 359.4 319 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 7.8e-96 354.8 275 62.9
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-93 347.4 272 69.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 6.8e-92 341.7 233 75.5
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.9e-81 307.0 246 60.6
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.9e-74 283.1 242 63.2
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 2.9e-74 283.1 279 48.4
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.9e-71 272.7 322 46.0
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.2e-67 261.2 165 80.6
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.2e-65 253.1 149 81.2
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 2.5e-62 243.4 318 46.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 8.4e-50 201.8 226 43.8
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.9e-49 200.7 158 66.5
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.8e-45 186.0 112 82.1
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.4e-41 174.5 286 37.1
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 2.5e-38 163.7 374 32.9
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.9e-36 155.6 94 79.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-35 154.1 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-35 154.1 94 78.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.9e-33 147.5 193 47.2
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 7.1e-33 145.6 97 79.4
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 2.1e-32 144.1 95 80.0
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.5e-27 127.9 111 61.3
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.0e-23 113.6 134 50.7
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.3e-22 109.8 73 76.7
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.3e-20 102.8 53 94.3
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.5e-19 99.8 68 70.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.2e-16 91.7 77 63.6
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 6.7e-15 85.9 104 47.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.3e-14 83.6 80 57.5
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 9.7e-14 82.0 48 77.1
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 9.7e-14 82.0 48 77.1
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-09 68.6 85 45.9


User provided reference genes

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