Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 0.0e+00 2950.2 1639 100.0
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 0.0e+00 2475.3 1565 88.1
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 0.0e+00 1931.4 1212 87.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 1752.6 1823 60.9
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 1701.8 1657 63.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 0.0e+00 1390.6 1746 55.7
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.8e-101 374.0 1551 31.3
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 4.8e-95 354.4 1609 30.6
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.4e-94 352.8 1761 28.2
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.5e-77 296.2 1675 28.8
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 2.0e-72 279.3 1443 29.0
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.0e-72 279.3 1583 28.2
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.2e-71 273.9 477 43.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.7e-68 266.2 1705 27.7
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 3.2e-67 261.9 1617 27.6
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 3.6e-66 258.5 1613 27.3
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.5e-64 253.1 1637 26.9
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.2e-63 249.2 1745 26.8
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.2e-63 249.2 1653 27.4
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 6.5e-60 237.7 1730 27.6
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.5e-59 236.5 1687 26.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.2e-59 235.3 1800 26.6
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.7e-58 232.3 1779 26.5
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.7e-58 232.3 1543 27.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 8.8e-57 227.3 1776 27.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.0e-56 226.1 1788 26.6
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.4e-56 224.9 602 33.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 9.8e-56 223.8 1530 26.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.8e-55 222.2 1744 26.8
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.3e-55 221.1 687 33.9
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.1e-54 218.8 687 33.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 9.1e-54 217.2 1446 26.8
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 4.5e-53 214.9 1760 26.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.5e-51 209.9 486 36.4
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.5e-51 209.9 1522 25.8
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 4.2e-51 208.4 1762 25.7
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.7e-50 205.7 1532 26.0
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.7e-50 204.9 1571 25.2
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.8e-49 203.0 1670 25.4
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 5.2e-49 201.4 1636 26.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.8e-49 200.7 1537 25.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.4e-48 198.4 1593 25.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 5.7e-48 198.0 1494 26.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-47 196.1 1665 25.8
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.8e-47 195.7 1615 25.7
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 3.7e-47 195.3 687 30.3
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.9e-47 194.9 408 39.5
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.1e-46 193.7 1658 26.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.1e-46 193.7 1516 26.6
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.4e-46 193.4 1687 26.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.4e-46 193.4 370 41.6
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.8e-46 193.0 1631 25.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.1e-46 192.2 1644 25.9
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.9e-44 185.7 1543 25.3
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 7.3e-43 181.0 716 30.9
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.2e-42 180.3 1476 25.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.6e-42 178.7 419 37.7
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.0e-41 177.2 1724 25.2
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.3e-41 176.0 1484 25.2
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.2e-41 174.9 572 35.3
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 6.4e-39 167.9 543 33.7
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 7.8e-37 161.0 522 33.3
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.7e-36 159.8 1601 25.2
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 3.0e-36 159.1 425 33.6
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 6.6e-36 157.9 438 36.8
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.1e-35 157.1 568 31.0
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.9e-35 156.4 1579 25.2
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 5.6e-35 154.8 644 29.8
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.0e-34 151.0 1536 25.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.4e-33 150.2 1780 25.1
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.3e-33 149.4 575 30.1
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 6.8e-33 147.9 1817 25.0
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 8.9e-33 147.5 615 29.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.6e-32 146.0 1770 25.3
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.4e-32 145.6 172 54.7
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 5.8e-32 144.8 1716 24.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-31 143.7 1628 24.3
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.2e-31 142.9 566 29.3
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 4.9e-31 141.7 421 32.5
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 8.3e-31 141.0 530 31.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-30 140.6 130 59.2
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.4e-30 139.4 570 28.9
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 7.8e-29 134.4 521 29.2
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 7.8e-29 134.4 521 29.2
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.0e-28 134.0 506 32.0
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.0e-28 134.0 173 50.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.0e-28 132.5 506 31.6
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 6.6e-28 131.3 1612 25.7
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-27 130.6 618 28.2
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.3e-27 129.0 1561 24.9
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 5.6e-27 128.3 642 29.3
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 2.1e-26 126.3 646 26.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 3.6e-26 125.6 1749 25.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 6.2e-26 124.8 1614 24.7
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 8.1e-26 124.4 1796 24.4
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.4e-25 123.6 1610 25.0
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-25 123.2 619 27.9
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.0e-25 122.1 804 25.0
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.2e-24 120.6 447 29.1
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 7.5e-24 117.9 502 29.7
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 9.8e-24 117.5 401 33.9
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 4.9e-23 115.2 1588 23.8
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 6.4e-23 114.8 1588 23.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 5.4e-22 111.7 1434 24.3
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 7.1e-22 111.3 552 28.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-21 109.8 399 30.8
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 4.6e-21 108.6 394 31.0
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.0e-20 107.5 681 26.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-20 107.1 115 60.9
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-19 104.0 1514 23.8
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 8.9e-17 94.4 131 45.0
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 9.9e-16 90.9 550 24.9
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 4.1e-14 85.5 359 32.9
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.4e-14 85.1 246 31.3
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.6e-13 83.6 551 24.1
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.1e-11 77.4 440 27.0
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 5.6e-11 75.1 1536 23.8
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.1e-10 73.2 64 57.8
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 5.2e-09 68.6 191 35.6
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.7e-07 63.5 128 40.6
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.2e-07 63.2 130 36.9
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.9e-06 60.1 641 23.6
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 4.2e-06 58.9 63 50.8


User provided reference genes

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