Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 0.0e+00 1208.4 611 100.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 0.0e+00 1181.8 611 97.5
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 0.0e+00 1173.7 611 96.9
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 0.0e+00 1078.2 611 88.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1078.2 611 87.7
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.7e-311 1072.0 612 87.7
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.2e-290 1002.7 603 83.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 8.5e-255 883.6 612 72.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.9e-254 882.5 612 72.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 6.7e-252 874.0 613 72.6
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.5e-251 872.1 612 72.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 6.3e-250 867.5 614 70.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.6e-248 862.1 595 72.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.9e-248 860.9 612 71.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 7.7e-248 860.5 613 70.6
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.0e-247 860.1 614 70.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 5.5e-246 854.4 623 69.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-245 853.2 610 70.7
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.0e-244 850.1 613 69.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.3e-242 843.2 616 68.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.7e-242 842.8 611 69.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.8e-242 841.3 611 68.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 8.2e-242 840.5 612 69.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.8e-241 839.3 628 69.1
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.1e-241 838.2 617 68.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.3e-241 837.8 613 69.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.2e-240 836.6 617 69.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.4e-240 835.1 614 69.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.4e-240 835.1 614 69.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.0e-239 833.6 620 67.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.0e-239 833.6 615 68.9
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.3e-239 833.2 616 67.7
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.7e-239 832.8 614 68.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 3.8e-239 831.6 624 68.3
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.5e-239 830.5 615 68.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 8.5e-239 830.5 614 68.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-238 830.1 613 68.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 4.2e-238 828.2 613 67.7
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 9.4e-238 827.0 617 68.2
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-237 826.6 617 68.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.2e-237 826.6 616 68.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.6e-237 826.2 689 62.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.1e-237 825.9 616 67.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.4e-236 823.2 618 69.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.4e-236 823.2 620 69.4
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 3.0e-236 822.0 612 69.0
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.0e-235 819.3 617 68.4
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.3e-234 816.6 617 66.0
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.7e-234 816.2 611 68.1
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 8.2e-234 813.9 612 67.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 8.2e-234 813.9 612 66.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.1e-233 813.5 612 67.8
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.1e-233 813.5 612 66.2
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 9.1e-233 810.4 614 66.8
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.7e-231 806.2 611 66.8
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.9e-231 805.4 611 66.9
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.5e-230 801.2 613 65.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 9.4e-230 800.4 612 65.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.7e-229 798.9 612 65.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.7e-229 798.9 612 65.5
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.7e-229 798.9 612 65.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 6.1e-229 797.7 612 65.5
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.4e-228 796.6 612 66.3
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.8e-228 796.2 614 67.3
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-228 796.2 618 66.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.2e-228 794.7 618 66.2
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 8.8e-228 793.9 613 64.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.0e-227 792.7 613 64.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 5.7e-227 791.2 615 66.2
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.7e-226 789.6 613 64.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.3e-225 784.6 613 64.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 9.1e-225 783.9 614 65.3
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.5e-224 781.6 608 65.1
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.2e-223 779.2 605 65.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.0e-220 770.4 569 68.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.0e-220 768.5 568 68.7
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.7e-218 763.1 611 64.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.7e-218 763.1 567 68.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.7e-218 763.1 744 56.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.0e-215 753.8 615 63.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.9e-215 752.3 597 64.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.9e-215 752.3 617 61.8
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.8e-215 751.9 617 61.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.0e-212 743.8 546 68.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.0e-212 742.3 547 67.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 5.2e-212 741.5 574 66.4
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.8e-197 692.6 613 57.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.7e-191 673.3 614 59.9
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.1e-189 666.4 624 55.9
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.8e-189 666.0 618 59.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.1e-183 645.2 500 67.6
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.3e-174 615.5 685 52.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 9.3e-169 597.8 677 48.9
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 9.6e-166 587.8 526 60.1
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.4e-161 573.9 491 62.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 2.7e-152 543.1 506 56.3
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.5e-147 525.8 362 72.9
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-144 517.3 387 67.2
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 7.2e-137 491.9 384 65.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 3.6e-128 463.0 360 66.7
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.8e-124 450.7 232 100.0
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.7e-117 426.4 321 66.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 2.6e-115 420.2 359 61.3
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-113 414.8 437 53.5
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 7.7e-107 392.1 651 39.3
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-107 392.1 387 56.1
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.9e-106 390.2 257 76.3
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.8e-103 380.9 257 73.9
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.4e-100 370.5 256 72.3
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 6.1e-96 355.9 244 70.5
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.2e-86 325.1 632 36.2
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.9e-73 281.2 179 74.3
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-59 234.2 222 57.2
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-55 220.7 220 55.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.2e-51 208.8 169 66.3
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.8e-47 194.9 159 62.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.6e-43 180.3 111 80.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.0e-42 179.1 110 80.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-42 179.1 111 81.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 8.7e-42 176.0 106 79.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-41 174.9 109 75.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 7.4e-41 172.9 111 77.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 3.5e-35 154.1 104 67.3
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-34 150.6 128 65.6
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-31 139.8 99 71.7
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.2e-29 134.8 82 75.6
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-27 127.9 119 57.1
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-26 125.9 83 72.3
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.7e-26 123.2 97 58.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.7e-26 123.2 97 58.8
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 5.7e-25 120.2 524 24.8
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.5e-22 112.1 131 49.6
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 3.4e-22 110.9 71 67.6
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-22 109.8 129 48.8
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-21 107.8 69 78.3
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-19 102.4 66 75.8
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-18 98.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.1e-18 97.1 88 53.4
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.7e-17 93.6 144 40.3
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-13 80.1 55 67.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-11 73.6 41 80.5
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-10 72.0 40 80.0
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 5.1e-10 70.5 50 68.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 8.8e-10 69.7 41 80.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 2.6e-09 68.2 182 27.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-07 62.4 41 68.3
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.1e-07 61.2 45 71.1
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-06 58.9 46 63.0


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