Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.1e-78 296.6 155 100.0
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.1e-78 296.6 155 100.0
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.0e-76 290.0 155 95.5
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 2.4e-73 278.9 155 92.3
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.0e-71 273.5 156 91.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.3e-63 246.5 155 81.9
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 3.3e-62 241.9 155 78.7
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 7.3e-62 240.7 155 78.1
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 7.3e-62 240.7 126 94.4
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 9.5e-62 240.4 155 78.1
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 9.5e-62 240.4 155 77.4
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.6e-61 239.6 155 78.1
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 2.8e-61 238.8 155 78.7
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.8e-61 238.8 154 78.6
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 3.6e-61 238.4 155 76.8
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 6.2e-61 237.7 155 78.7
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 6.2e-61 237.7 155 78.1
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.8e-60 236.1 155 76.1
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 2.3e-60 235.7 156 77.6
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.3e-60 235.7 155 76.1
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 3.1e-60 235.3 158 77.8
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 5.2e-60 234.6 155 75.5
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 8.9e-60 233.8 155 74.8
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.2e-59 233.4 155 75.5
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.2e-59 233.4 156 78.2
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 1.2e-59 233.4 155 76.1
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.6e-59 232.3 155 74.8
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 2.6e-59 232.3 155 75.5
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 4.4e-59 231.5 155 75.5
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.3e-58 229.9 155 74.2
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.7e-58 229.6 156 75.6
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.7e-58 229.6 157 76.4
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.2e-58 229.2 155 72.9
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 4.9e-58 228.0 155 72.3
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 8.3e-58 227.3 155 72.9
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 8.3e-58 227.3 155 72.3
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.4e-57 226.5 155 75.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 1.4e-57 226.5 157 74.5
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.9e-57 226.1 155 75.5
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 2.4e-57 225.7 155 72.3
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.2e-57 225.3 155 74.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.1e-56 222.6 126 90.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.7e-56 222.2 155 71.6
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 3.5e-56 221.9 155 71.0
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 4.6e-56 221.5 155 71.0
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.8e-56 220.7 155 73.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.0e-55 220.3 156 71.2
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.7e-55 219.5 155 72.3
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.7e-55 219.5 156 73.1
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 3.9e-55 218.4 156 72.4
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 5.1e-55 218.0 156 71.8
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 8.6e-55 217.2 157 72.0
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 8.6e-55 217.2 180 65.0
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.1e-54 216.9 157 70.1
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.9e-54 216.1 140 75.0
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 2.5e-54 215.7 155 69.0
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 4.3e-54 214.9 149 76.5
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 4.3e-54 214.9 156 70.5
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 5.6e-54 214.5 156 71.2
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 9.5e-54 213.8 146 71.9
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 9.5e-54 213.8 157 70.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.2e-53 213.4 157 70.7
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.2e-53 213.4 157 70.7
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.2e-53 213.4 157 70.7
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.2e-53 213.4 157 70.7
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.6e-53 213.0 156 70.5
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 2.8e-53 212.2 204 59.3
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 4.7e-53 211.5 157 69.4
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 4.7e-53 211.5 147 72.1
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 6.2e-53 211.1 157 70.7
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 8.1e-53 210.7 157 69.4
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 8.9e-52 207.2 147 73.5
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 7.6e-51 204.1 157 68.2
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 7.6e-51 204.1 158 67.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 7.6e-51 204.1 154 65.6
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 4.9e-50 201.4 177 62.7
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 6.4e-50 201.1 158 66.5
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.2e-48 196.8 141 68.1
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.7e-48 195.7 142 69.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.6e-48 194.9 146 67.8
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.8e-48 194.1 146 67.1
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-47 193.7 146 67.1
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.3e-47 193.4 137 70.8
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.9e-46 189.5 126 75.4
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 4.3e-46 188.3 126 71.4
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 5.6e-46 188.0 125 74.4
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.1e-44 183.7 137 72.3
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 5.8e-43 177.9 142 64.1
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.7e-42 176.4 122 72.1
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 2.4e-41 172.6 138 61.6
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 7.1e-41 171.0 160 58.1
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 1.6e-40 169.9 158 57.6
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.3e-39 166.8 155 60.6
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 5.1e-39 164.9 155 58.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.3e-33 144.1 144 54.9
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 2.5e-30 136.0 130 58.5
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 3.3e-30 135.6 103 66.0
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 6.2e-29 131.3 125 57.6
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.8e-28 129.8 146 54.8
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 5.3e-28 128.3 155 49.7
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.5e-27 126.7 137 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.6e-27 125.9 132 48.5
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 4.9e-26 121.7 146 54.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 6.0e-24 114.8 85 69.4
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.8e-23 113.2 85 68.2
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.1e-20 104.0 75 61.3
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 2.6e-19 99.4 155 45.2
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 4.5e-19 98.6 64 71.9
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.3e-18 97.1 168 38.7
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.3e-18 97.1 164 38.4
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 1.6e-16 90.1 71 56.3
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 2.1e-16 89.7 72 73.6
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 9.7e-14 80.9 52 73.1
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 3.1e-12 75.9 104 44.2
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 6.9e-12 74.7 43 83.7
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.5e-11 73.6 111 44.1
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.5e-11 73.6 44 79.5
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 4.5e-11 72.0 65 55.4
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.0e-10 70.9 44 75.0
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-09 65.9 43 74.4
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 4.6e-08 62.0 55 56.4
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 1.4e-07 60.5 85 40.0
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.5e-06 56.2 36 75.0


User provided reference genes

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