Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 5.9e-166 587.4 288 100.0
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-153 546.6 287 94.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.4e-153 545.0 282 95.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 3.0e-146 521.9 282 92.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.8e-142 507.3 278 91.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.3e-136 490.0 286 84.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-129 465.7 278 85.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.4e-111 404.8 279 73.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-109 400.2 279 72.4
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.8e-107 391.7 281 71.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.7e-104 383.3 285 67.4
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.6e-102 376.7 279 66.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.7e-102 375.9 281 67.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.5e-102 375.6 281 65.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.0e-102 374.8 281 66.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.5e-100 370.2 289 67.1
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.3e-99 367.1 281 65.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 5.3e-98 361.7 280 65.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.5e-97 360.1 280 64.3
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.6e-97 359.4 307 61.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.4e-97 359.0 283 64.7
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 5.8e-97 358.2 279 65.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.7e-96 356.7 278 64.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.7e-96 356.7 292 63.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-95 352.8 279 64.5
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.2e-95 352.4 281 63.7
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.3e-95 350.9 279 64.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.7e-94 349.4 279 63.4
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 6.0e-94 348.2 278 62.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 6.0e-94 348.2 285 62.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 6.0e-94 348.2 285 60.4
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.3e-93 347.1 279 62.4
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-93 347.1 285 62.1
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.8e-93 346.7 285 62.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 2.3e-93 346.3 278 62.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.3e-93 346.3 278 61.9
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.3e-93 346.3 285 63.9
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 6.7e-93 344.7 278 61.5
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 8.7e-93 344.4 285 63.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.9e-92 343.2 279 61.6
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.9e-92 343.2 278 61.5
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.5e-92 342.8 278 62.6
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.3e-92 342.4 275 64.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.3e-92 342.4 275 64.0
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-92 342.4 287 62.0
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.3e-92 342.4 254 67.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 7.4e-92 341.3 278 61.2
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 7.4e-92 341.3 281 63.3
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.3e-91 340.5 278 61.5
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.6e-91 340.1 275 63.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.1e-91 339.7 279 61.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.8e-91 339.3 280 62.1
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.2e-91 338.2 285 61.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 6.2e-91 338.2 280 62.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.1e-90 337.4 285 60.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.4e-90 337.0 290 59.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.3e-90 335.1 278 61.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.9e-90 334.7 306 56.9
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.2e-89 334.0 280 60.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.0e-89 333.2 288 60.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.6e-89 332.8 277 61.0
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.5e-89 332.0 281 58.7
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.8e-89 331.6 280 61.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 5.8e-89 331.6 280 61.8
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 5.8e-89 331.6 280 61.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-88 329.7 280 61.4
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.5e-88 328.2 280 62.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 5.5e-87 325.1 284 57.0
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 5.5e-87 325.1 278 60.8
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.1e-87 324.7 238 65.5
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.7e-86 322.8 278 57.6
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.7e-86 322.8 278 61.2
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.7e-86 322.8 238 65.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.7e-86 322.8 283 59.7
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-85 320.5 307 55.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.8e-85 320.1 236 69.1
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.3e-85 319.7 281 59.4
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 3.0e-85 319.3 236 70.3
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.3e-84 315.5 227 68.3
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 7.4e-84 314.7 232 66.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.6e-83 313.5 262 62.2
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.4e-82 310.5 280 58.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.2e-81 307.4 303 51.8
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 5.9e-81 305.1 277 56.3
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 5.9e-81 305.1 277 56.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.7e-80 303.5 302 52.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.2e-80 303.1 298 52.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.8e-80 302.4 266 60.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.7e-76 288.5 275 52.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.8e-74 283.5 278 51.8
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 5.3e-74 282.0 279 49.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 7.7e-73 278.1 243 59.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.0e-72 277.7 280 53.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.7e-72 276.9 300 46.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-72 276.9 277 54.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.9e-72 276.2 298 48.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.9e-72 276.2 298 48.7
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.8e-72 275.8 292 49.3
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.8e-72 275.8 349 47.6
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 8.5e-72 274.6 275 49.8
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-71 273.9 237 60.8
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.9e-71 273.5 293 48.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.5e-71 271.9 284 51.8
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.7e-70 269.6 275 49.1
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.3e-69 266.5 286 50.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 8.8e-69 264.6 285 49.1
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.5e-68 263.8 215 60.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.6e-68 263.1 202 66.8
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.3e-67 260.8 164 76.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.3e-67 258.5 278 48.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.8e-66 256.9 278 50.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-65 254.2 295 46.1
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.2e-65 254.2 295 46.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.2e-65 254.2 295 46.1
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.7e-65 251.5 195 62.6
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.3e-64 250.8 166 70.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.5e-64 248.1 226 53.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.1e-62 243.4 277 50.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 5.2e-61 238.8 144 77.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-60 237.7 232 54.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-58 230.7 280 49.3
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.1e-58 229.6 233 53.6
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 7.0e-58 228.4 277 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.2e-57 227.6 278 42.8
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.2e-57 227.6 279 43.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.5e-57 226.1 287 46.0
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 5.9e-57 225.3 164 66.5
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.9e-57 225.3 268 46.6
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.0e-56 224.6 164 67.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 4.2e-55 219.2 280 47.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-52 211.1 279 42.3
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.4e-52 209.1 278 44.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.1e-50 203.0 277 46.6
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.3e-50 202.2 145 65.5
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.9e-41 172.2 198 44.4
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-33 147.9 280 36.1
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.0e-25 120.6 223 39.0
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.9e-24 116.3 117 56.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 6.6e-24 115.5 117 46.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.7e-19 100.9 99 54.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.1e-13 80.1 282 30.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.9e-11 73.6 180 31.7
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-09 68.2 79 51.9
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.7e-09 67.0 68 50.0
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 7.3e-07 58.9 73 52.1


User provided reference genes

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