Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 2951.4 1502 100.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 2916.7 1501 98.1
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 2906.7 1501 97.7
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 2845.1 1491 96.6
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 2633.2 1416 93.4
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2436.0 1504 81.4
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 2417.5 1507 80.6
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 2416.0 1507 80.2
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 2415.2 1511 79.7
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 2412.1 1504 80.7
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2409.4 1504 80.8
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2409.4 1504 80.8
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 2408.3 1504 80.5
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 2408.3 1507 80.8
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 2406.7 1507 79.4
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 2405.2 1507 80.2
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 2404.0 1506 80.1
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 2400.2 1508 79.5
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 2398.2 1506 79.5
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 2392.1 1506 79.6
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2390.9 1507 79.7
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 2389.4 1509 79.3
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 2388.2 1504 78.7
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 2387.8 1508 78.8
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 2382.8 1507 79.3
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 2382.8 1509 79.3
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 2381.3 1505 79.4
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2380.9 1506 79.8
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 2379.7 1505 79.3
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 2371.3 1506 79.5
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2369.7 1506 78.9
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2367.4 1506 79.4
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2367.0 1506 78.6
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2362.0 1506 78.5
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2359.7 1505 78.5
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2357.0 1506 79.0
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 2354.7 1504 78.8
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 2350.5 1507 79.0
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 2340.5 1504 77.3
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2339.3 1510 78.1
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2338.9 1510 78.1
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 2336.6 1507 76.9
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 2336.2 1507 77.0
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 2334.3 1507 77.1
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2332.8 1507 78.4
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 2330.8 1507 76.7
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 2327.0 1511 77.9
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2326.2 1510 77.0
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 2322.0 1516 77.3
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2313.9 1514 76.4
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2313.9 1500 78.9
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 2308.9 1511 77.0
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 2308.9 1511 77.0
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2308.5 1507 76.4
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2304.6 1510 76.9
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 2304.6 1507 75.6
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 2301.6 1512 76.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2297.3 1508 76.7
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2294.6 1506 76.5
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2292.7 1510 76.3
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2291.5 1510 76.1
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2286.5 1513 75.7
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 2284.2 1504 76.5
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 2276.5 1511 75.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 2273.8 1507 75.7
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2271.1 1504 76.4
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2271.1 1504 76.4
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 2267.7 1478 76.9
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 2259.6 1507 76.1
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2255.3 1510 75.6
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 2251.1 1505 74.8
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2251.1 1510 75.5
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 2246.5 1505 74.4
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 2243.8 1504 74.7
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 2239.9 1504 74.5
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 2239.2 1504 74.3
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 2238.8 1504 74.2
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 2236.1 1504 74.2
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 2231.8 1506 74.1
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 2217.6 1504 73.2
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 2216.0 1506 73.6
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2215.3 1507 73.6
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 2208.7 1506 73.4
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2203.7 1512 72.9
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2190.2 1507 73.8
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2179.1 1433 77.3
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2172.5 1512 72.4
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 2141.3 1508 70.8
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 2105.1 1510 69.7
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 2075.4 1506 71.2
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 2028.1 1263 79.2
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 2006.9 1516 67.2
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1992.6 1457 69.1
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 1955.6 1260 78.3
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 1806.2 1552 60.4
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1758.8 1527 59.6
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1749.6 1432 63.1
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1736.9 1528 59.0
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1733.0 1513 60.1
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 1696.0 1024 82.9
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 1687.9 1241 73.2
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 1679.1 1504 61.8
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1612.4 1115 73.0
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 1540.4 1000 77.3
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 1415.2 1666 49.2
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 1398.3 892 78.5
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 5.6e-308 1061.6 877 63.5
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 4.4e-220 769.6 652 62.6
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.3e-171 608.6 389 78.7
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.6e-150 538.5 365 72.9
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 1.5e-116 425.6 580 47.1
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 1.6e-105 389.0 311 62.4
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 1.2e-103 382.9 212 94.3
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.9e-77 295.8 187 76.5
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 2.4e-77 295.4 268 57.5
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 6.6e-75 287.3 478 40.6
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 5.1e-67 261.2 1292 23.3
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 5.1e-67 261.2 287 52.3
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 6.6e-67 260.8 188 69.1
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 4.1e-61 241.5 221 56.1
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 9.3e-53 213.8 268 46.3
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 6.6e-51 207.6 291 46.7
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 4.9e-46 191.4 147 65.3
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.9e-46 191.4 121 73.6
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.4e-40 172.6 121 68.6
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.7e-38 166.4 121 66.9
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 2.2e-38 166.0 120 66.7
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.4e-38 164.5 121 66.1
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 2.5e-34 152.5 102 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 2.1e-33 149.4 176 46.6
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 8.1e-33 147.5 122 60.7
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.2e-30 139.4 122 59.8
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 2.0e-15 89.7 61 73.8
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 1.3e-14 87.0 103 46.6
Psat7g160960 Pisum sativum HOM05D001399 ORTHO05D002785 2.2e-09 69.7 85 43.5
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 6.9e-08 64.7 61 44.3
Psat2g102800 Pisum sativum HOM05D038693 ORTHO05D320111 6.9e-08 64.7 138 34.1
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 1.2e-07 63.9 53 54.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.0e-07 63.2 37 75.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.7e-07 61.2 58 51.7
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 2.2e-06 59.7 61 44.3
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 3.8e-06 58.9 67 44.8
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.8e-06 58.9 52 63.5
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 5.0e-06 58.5 65 38.5


User provided reference genes

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