Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400046391 Solanum tuberosum HOM05D063173 ORTHO05D051196 4.8e-111 404.4 194 100.0
Solyc10g045773.1 Solanum lycopersicum HOM05D063173 ORTHO05D051196 1.3e-20 104.0 81 66.7
CAN.G696.1 Capsicum annuum HOM05D001615 ORTHO05D115054 6.9e-17 91.7 199 29.1
Migut.N01501 Erythranthe guttata HOM05D001615 ORTHO05D001493 2.3e-12 76.6 108 34.3
SGA_v2.0_scaffold172G39081 Striga asiatica HOM05D001615 ORTHO05D001493 2.3e-12 76.6 108 35.2
Zm00001eb170610 Zea mays HOM05D001615 ORTHO05D001493 2.3e-12 76.6 107 32.7
Ah.08g213140 Amaranthus hybridus HOM05D000121 ORTHO05D001493 3.9e-12 75.9 107 30.8
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 5.1e-12 75.5 111 33.3
Zm00001eb042830 Zea mays HOM05D001615 ORTHO05D001493 5.1e-12 75.5 107 31.8
SalBow2G2742 Salvia bowleyana HOM05D001615 ORTHO05D001493 6.6e-12 75.1 108 32.4
Nitab4.5_0005515g0040 Nicotiana tabacum HOM05D001615 ORTHO05D001493 8.7e-12 74.7 108 34.3
CSS0040330 Camellia sinensis var. sinensis HOM05D001615 ORTHO05D001493 1.1e-11 74.3 108 30.6
Lj2A1192G46 Lonicera japonica HOM05D001615 ORTHO05D001493 1.1e-11 74.3 97 36.1
Nn3g21457 Nelumbo nucifera HOM05D001615 ORTHO05D001493 1.5e-11 73.9 108 31.5
Actinidia32225 Actinidia chinensis HOM05D001615 ORTHO05D001493 1.9e-11 73.6 108 33.3
GSVIVG01027988001 Vitis vinifera HOM05D001615 ORTHO05D001493 1.9e-11 73.6 136 28.7
Cfa005934 Carpinus fangiana HOM05D001615 ORTHO05D001493 2.5e-11 73.2 107 29.0
CSS0042364 Camellia sinensis var. sinensis HOM05D001615 ORTHO05D001493 3.3e-11 72.8 97 33.0
Haze_04911 Corylus avellana HOM05D001615 ORTHO05D001493 3.3e-11 72.8 107 28.0
Dinv19705 Davidia involucrata HOM05D001615 ORTHO05D001493 4.3e-11 72.4 108 29.6
Manes.05G063300 Manihot esculenta HOM05D001615 ORTHO05D001493 4.3e-11 72.4 108 32.4
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.3e-11 72.4 107 30.8
unitig_61.g26311 Utricularia gibba HOM05D001615 ORTHO05D001493 4.3e-11 72.4 108 33.3
CiPaw.08G096700 Carya illinoinensis HOM05D001615 ORTHO05D001493 5.6e-11 72.0 107 29.9
FvH4_2g25540 Fragaria vesca HOM05D001615 ORTHO05D001493 5.6e-11 72.0 108 33.3
FAN15G3676 Fragaria x ananassa HOM05D001615 ORTHO05D001493 5.6e-11 72.0 108 33.3
FAN24G1408 Fragaria x ananassa HOM05D001615 ORTHO05D001493 5.6e-11 72.0 108 33.3
FAN27G3526 Fragaria x ananassa HOM05D001615 ORTHO05D001493 5.6e-11 72.0 108 33.3
Nitab4.5_0002469g0050 Nicotiana tabacum HOM05D001615 ORTHO05D001493 5.6e-11 72.0 108 33.3
MSTRG.12605 Avicennia marina HOM05D001615 ORTHO05D001493 7.3e-11 71.6 108 32.4
Sp1g01870 Schrenkiella parvula HOM05D001615 ORTHO05D001493 7.3e-11 71.6 107 32.7
Aa31LG5G2080 Aethionema arabicum HOM05D001615 ORTHO05D001493 9.6e-11 71.2 107 32.7
FAN20G1600 Fragaria x ananassa HOM05D001615 ORTHO05D001493 9.6e-11 71.2 108 32.4
THA.LOC104801273 Tarenaya hassleriana HOM05D001615 ORTHO05D001493 1.3e-10 70.9 107 32.7
SGA_v2.0_scaffold36G14344 Striga asiatica HOM05D001615 ORTHO05D001493 1.6e-10 70.5 108 31.5
Aqoxy5G00739 Aquilegia oxysepala HOM05D001615 ORTHO05D001493 2.1e-10 70.1 97 33.0
Gohir.D08G052300 Gossypium hirsutum HOM05D001615 ORTHO05D001493 2.1e-10 70.1 107 29.9
Gorai.004G052400 Gossypium raimondii HOM05D001615 ORTHO05D001493 2.1e-10 70.1 107 29.9
MD11G1306100 Malus domestica HOM05D001615 ORTHO05D001493 2.1e-10 70.1 108 31.5
Prupe.8G259700 Prunus persica HOM05D001615 ORTHO05D001493 2.1e-10 70.1 108 30.6
TAR362G0807 Trochodendron aralioides HOM05D001615 ORTHO05D001493 2.1e-10 70.1 108 29.6
Actinidia24340 Actinidia chinensis HOM05D001615 ORTHO05D001493 2.8e-10 69.7 108 31.5
Aqoxy2G02972 Aquilegia oxysepala HOM05D001615 ORTHO05D001493 2.8e-10 69.7 108 30.6
Cpa.g.sc9.223 Carica papaya HOM05D001615 ORTHO05D001493 2.8e-10 69.7 108 31.5
Thhalv10008755m.g Eutrema salsugineum HOM05D001615 ORTHO05D001493 2.8e-10 69.7 107 31.8
Gohir.A08G042500 Gossypium hirsutum HOM05D001615 ORTHO05D001493 2.8e-10 69.7 107 29.9
MSTRG.17410 Avicennia marina HOM05D001615 ORTHO05D001493 3.6e-10 69.3 108 31.5
CAN.G339.21 Capsicum annuum HOM05D001615 ORTHO05D001493 3.6e-10 69.3 107 30.8
Hund05417 Selenicereus undatus HOM05D001615 ORTHO05D001493 3.6e-10 69.3 107 28.0
TAR455G0004 Trochodendron aralioides HOM05D001615 ORTHO05D001493 3.6e-10 69.3 108 30.6
TAR633G1365 Trochodendron aralioides HOM05D001615 ORTHO05D001493 3.6e-10 69.3 108 30.6
BcaB03g15757 Brassica carinata HOM05D001615 ORTHO05D001493 4.8e-10 68.9 107 31.8
Manes.01G217800 Manihot esculenta HOM05D001615 ORTHO05D001493 4.8e-10 68.9 108 31.5
Sed0022002 Sechium edule HOM05D001615 ORTHO05D001493 4.8e-10 68.9 107 29.9
PGSC0003DMG400011398 Solanum tuberosum HOM05D001615 ORTHO05D001493 4.8e-10 68.9 108 33.3
CANSAT25G1204 Cannabis sativa HOM05D001615 ORTHO05D001493 6.2e-10 68.6 108 26.9
ClCG09G005960 Citrullus lanatus HOM05D001615 ORTHO05D001493 6.2e-10 68.6 107 29.9
MELO3C016012.2 Cucumis melo HOM05D001615 ORTHO05D001493 6.2e-10 68.6 107 29.9
CsaV3_7G029160 Cucumis sativus L. HOM05D001615 ORTHO05D001493 6.2e-10 68.6 107 29.9
Duzib138G1883 Durio zibethinus HOM05D001615 ORTHO05D001493 6.2e-10 68.6 108 30.6
Solyc09g075010.3 Solanum lycopersicum HOM05D001615 ORTHO05D001493 6.2e-10 68.6 108 33.3
TAR255G0001 Trochodendron aralioides HOM05D001615 ORTHO05D001493 8.1e-10 68.2 108 29.6
arahy.Tifrunner.gnm1.ann1.ZNF0Y2 Arachis hypogaea HOM05D001615 ORTHO05D001493 1.1e-09 67.8 107 27.1
Thhalv10028946m.g Eutrema salsugineum HOM05D001615 ORTHO05D001493 1.1e-09 67.8 107 29.0
RcHm_v2.0_Chr6g0293761 Rosa chinensis HOM05D001615 ORTHO05D001493 1.1e-09 67.8 108 30.6
Sc05g0004000 Simmondsia chinensis HOM05D001615 ORTHO05D001493 1.1e-09 67.8 107 28.0
Thecc.01G298500 Theobroma cacao HOM05D001615 ORTHO05D001493 1.1e-09 67.8 108 31.5
AT4G02450 Arabidopsis thaliana HOM05D001615 ORTHO05D001493 1.4e-09 67.4 107 28.0
arahy.Tifrunner.gnm1.ann1.HT2ILI Arachis hypogaea HOM05D001615 ORTHO05D001493 1.4e-09 67.4 107 27.1
arahy.Tifrunner.gnm1.ann1.JG5FL4 Arachis hypogaea HOM05D001615 ORTHO05D001493 1.4e-09 67.4 107 27.1
Sp6g02360 Schrenkiella parvula HOM05D001615 ORTHO05D001493 1.4e-09 67.4 107 29.0
AL1G12290 Arabidopsis lyrata HOM05D001615 ORTHO05D001493 1.8e-09 67.0 107 31.8
CDE11G0881 Ceratophyllum demersum HOM05D001615 ORTHO05D001493 1.8e-09 67.0 108 31.5
Dinv33043 Davidia involucrata HOM05D001615 ORTHO05D001493 1.8e-09 67.0 97 30.9
Lalb_Chr18g0047061 Lupinus albus HOM05D001615 ORTHO05D001493 1.8e-09 67.0 107 27.1
AL6G50610 Arabidopsis lyrata HOM05D001615 ORTHO05D001493 2.4e-09 66.6 107 28.0
C05p01500 Brassica napus HOM05D001615 ORTHO05D001493 2.4e-09 66.6 107 29.9
Cc01_g20740 Coffea canephora HOM05D001615 ORTHO05D001493 2.4e-09 66.6 97 33.0
Lalb_Chr15g0078561 Lupinus albus HOM05D001615 ORTHO05D001493 2.4e-09 66.6 107 27.1
QL12p026649 Quercus lobata HOM05D001615 ORTHO05D001493 2.4e-09 66.6 112 28.6
HPP92_011574 Vanilla planifolia HOM05D001615 ORTHO05D001493 2.4e-09 66.6 107 29.9
BraA03t12282Z Brassica rapa HOM05D001615 ORTHO05D001493 3.1e-09 66.2 107 28.0
Ciclev10022431m.g Citrus clementina HOM05D001615 ORTHO05D001493 3.1e-09 66.2 108 29.6
Sc24g0003840 Simmondsia chinensis HOM05D001615 ORTHO05D001493 3.1e-09 66.2 107 25.2
TWI59G0031 Tripterygium wilfordii HOM05D001615 ORTHO05D001493 3.1e-09 66.2 108 30.6
BolC5t28932H Brassica oleracea HOM05D001615 ORTHO05D001493 4.0e-09 65.9 107 29.9
CSS0001863 Camellia sinensis var. sinensis HOM05D001615 ORTHO05D001493 4.0e-09 65.9 108 29.6
MD03G1286200 Malus domestica HOM05D001615 ORTHO05D001493 4.0e-09 65.9 108 28.7
Nitab4.5_0002470g0010 Nicotiana tabacum HOM05D001615 ORTHO05D001493 4.0e-09 65.9 97 33.0
PSO210G5159 Papaver somniferum HOM05D001615 ORTHO05D001493 4.0e-09 65.9 108 29.6
arahy.Tifrunner.gnm1.ann1.9HBE4Z Arachis hypogaea HOM05D001615 ORTHO05D001493 5.3e-09 65.5 107 26.2
BolC3t16073H Brassica oleracea HOM05D001615 ORTHO05D001493 5.3e-09 65.5 107 29.0
CARHR002220 Cardamine hirsuta HOM05D001615 ORTHO05D001493 5.3e-09 65.5 107 31.8
Ca_09152_v3 Cicer arietinum L. HOM05D001615 ORTHO05D001493 5.3e-09 65.5 107 27.1
QL12p027286 Quercus lobata HOM05D001615 ORTHO05D001493 5.3e-09 65.5 107 28.0
ATR0796G175 Amborella trichopoda HOM05D001615 ORTHO05D001493 6.9e-09 65.1 108 29.6
A03p31050 Brassica napus HOM05D001615 ORTHO05D001493 6.9e-09 65.1 107 27.1
A10p01530 Brassica napus HOM05D001615 ORTHO05D001493 6.9e-09 65.1 107 29.0
RcHm_v2.0_Chr6g0293771 Rosa chinensis HOM05D001615 ORTHO05D001493 6.9e-09 65.1 108 29.6
FAN15G1601 Fragaria x ananassa HOM05D001615 ORTHO05D001493 9.0e-09 64.7 107 27.1
Lj1g0016419 Lotus japonicus HOM05D001615 ORTHO05D001493 9.0e-09 64.7 107 28.0
Lalb_Chr04g0259831 Lupinus albus HOM05D001615 ORTHO05D001493 9.0e-09 64.7 107 26.2
BcaB05g23635 Brassica carinata HOM05D001615 ORTHO05D001493 1.2e-08 64.3 107 29.0
BolC9t53131H Brassica oleracea HOM05D000125 ORTHO05D000120 1.2e-08 64.3 108 29.6
Carub.0006s3468 Capsella rubella HOM05D001615 ORTHO05D001493 1.2e-08 64.3 107 27.1
CARHR250720 Cardamine hirsuta HOM05D001615 ORTHO05D001493 1.2e-08 64.3 107 27.1
CDE05G0756 Ceratophyllum demersum HOM05D001615 ORTHO05D001493 1.2e-08 64.3 107 28.0
Duzib133G0470 Durio zibethinus HOM05D001615 ORTHO05D001493 1.2e-08 64.3 107 29.9
PSO170G5377 Papaver somniferum HOM05D001615 ORTHO05D001493 1.2e-08 64.3 108 29.6
BcaB01g02040 Brassica carinata HOM05D001615 ORTHO05D001493 1.5e-08 63.9 107 29.0
BcaNung05003 Brassica carinata HOM05D001615 ORTHO05D001493 1.5e-08 63.9 107 29.0
C09p01990 Brassica napus HOM05D000125 ORTHO05D000120 1.5e-08 63.9 108 29.6
ECA247G2022 Erigeron canadensis HOM05D001615 ORTHO05D001493 1.5e-08 63.9 108 32.4
Gorai.008G146000 Gossypium raimondii HOM05D001615 ORTHO05D001493 1.5e-08 63.9 108 28.7
MBI18_g08109_MAGBIO Magnolia biondii HOM05D001615 ORTHO05D001260 1.5e-08 63.9 108 27.8
THA.LOC104825973 Tarenaya hassleriana HOM05D001615 ORTHO05D001493 1.5e-08 63.9 107 29.9
BcaC01g06756 Brassica carinata HOM05D001615 ORTHO05D001493 2.0e-08 63.5 107 28.0
BcaC05g24585 Brassica carinata HOM05D001615 ORTHO05D001493 2.0e-08 63.5 107 29.0
Gohir.A12G131100 Gossypium hirsutum HOM05D001615 ORTHO05D001493 2.0e-08 63.5 108 27.8
TWI23G0317 Tripterygium wilfordii HOM05D001615 ORTHO05D001493 2.0e-08 63.5 108 30.6
Atru.chr5.1168 Acer truncatum HOM05D001615 ORTHO05D001493 2.6e-08 63.2 108 30.6
C03p37840 Brassica napus HOM05D001615 ORTHO05D001493 2.6e-08 63.2 107 28.0
BcaB01g02459 Brassica carinata HOM05D001615 ORTHO05D001493 3.4e-08 62.8 107 28.0
BcaC03g16127 Brassica carinata HOM05D001615 ORTHO05D001493 3.4e-08 62.8 107 28.0
C02p39040 Brassica napus HOM05D001615 ORTHO05D001493 3.4e-08 62.8 107 28.0
BolC2t09915H Brassica oleracea HOM05D002199 ORTHO05D007829 3.4e-08 62.8 107 28.0
BraA10t42429Z Brassica rapa HOM05D001615 ORTHO05D001493 3.4e-08 62.8 108 30.6
COL.COLO4_23363 Corchorus olitorius HOM05D001615 ORTHO05D001493 3.4e-08 62.8 107 25.2
Lsat_1_v5_gn_9_880 Lactuca sativa HOM05D001615 ORTHO05D001493 3.4e-08 62.8 97 35.1
BraA02t07461Z Brassica rapa HOM05D002199 ORTHO05D007829 4.5e-08 62.4 107 28.0
Gohir.D12G135000 Gossypium hirsutum HOM05D001615 ORTHO05D001493 4.5e-08 62.4 108 27.8
Hma1.2p1_0209F.1_g088480 Hydrangea macrophylla HOM05D001615 ORTHO05D001493 4.5e-08 62.4 97 33.0
TPR.G9624 Trifolium pratense HOM05D001615 ORTHO05D001493 4.5e-08 62.4 107 26.2
A02p24740 Brassica napus HOM05D001615 ORTHO05D001493 5.8e-08 62.0 107 28.0
DCAR_012393 Daucus carota HOM05D001615 ORTHO05D001493 5.8e-08 62.0 108 28.7
vmacro02461 Vaccinium macrocarpon HOM05D001615 ORTHO05D001493 5.8e-08 62.0 108 29.6
TWI14G0156 Tripterygium wilfordii HOM05D001615 ORTHO05D001493 7.6e-08 61.6 97 33.0
HanXRQChr15g0465921 Helianthus annuus HOM05D001615 ORTHO05D001493 9.9e-08 61.2 97 35.1
Sed0009077 Sechium edule HOM05D001615 ORTHO05D001493 9.9e-08 61.2 107 26.2
PGR044G0226 Punica granatum HOM05D001615 ORTHO05D001493 1.3e-07 60.8 107 27.1
Psat3g022000 Pisum sativum HOM05D001615 ORTHO05D001493 2.2e-07 60.1 107 25.2
HanXRQChr10g0284541 Helianthus annuus HOM05D001615 ORTHO05D001493 2.9e-07 59.7 97 34.0
Glyma.19G210600 Glycine max HOM05D001615 ORTHO05D001493 3.8e-07 59.3 107 25.2
Mapoly0006s0141 Marchantia polymorpha HOM05D001615 ORTHO05D001493 3.8e-07 59.3 107 27.1
Medtr7g108860 Medicago truncatula HOM05D001615 ORTHO05D001493 3.8e-07 59.3 114 24.6
Medtr8g058597 Medicago truncatula HOM05D001615 ORTHO05D001493 6.4e-07 58.5 107 25.2
HanXRQChr11g0320521 Helianthus annuus HOM05D001615 ORTHO05D001493 8.4e-07 58.2 107 24.3
Glyma.03G213802 Glycine max HOM05D001615 ORTHO05D001493 1.1e-06 57.8 108 26.9
VMungo1383G2702 Vigna mungo HOM05D001615 ORTHO05D001493 1.1e-06 57.8 116 25.9
Phvul.001G206400 Phaseolus vulgaris HOM05D001615 ORTHO05D001493 4.2e-06 55.8 108 25.0
Sopen09g029830 Solanum pennellii HOM05D001615 ORTHO05D001493 7.1e-06 55.1 90 33.3


User provided reference genes

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