Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400044874 Solanum tuberosum HOM05D003734 ORTHO05D004270 5.1e-147 524.6 312 100.0
PGSC0003DMG400020812 Solanum tuberosum HOM05D003734 ORTHO05D004270 5.0e-110 401.7 328 80.8
Sopen08g023740 Solanum pennellii HOM05D003734 ORTHO05D004270 1.7e-97 360.1 323 76.2
Solyc08g075110.3 Solanum lycopersicum HOM05D003734 ORTHO05D004270 7.5e-82 308.1 299 72.2
CAN.G22.31 Capsicum annuum HOM05D003734 ORTHO05D004270 7.0e-72 275.0 371 59.3
Sopen08g023720 Solanum pennellii HOM05D001080 ORTHO05D001081 1.2e-66 257.7 266 66.9
Solyc08g075090.4 Solanum lycopersicum HOM05D001080 ORTHO05D001081 5.0e-62 242.3 270 69.3
Peaxi162Scf00014g01814 Petunia axillaris HOM05D001080 ORTHO05D004270 5.2e-59 232.3 316 49.4
Nitab4.5_0000623g0010 Nicotiana tabacum HOM05D003734 ORTHO05D004270 7.1e-48 195.3 336 41.7
Nitab4.5_0008763g0020 Nicotiana tabacum HOM05D003734 ORTHO05D004270 1.7e-46 190.7 322 42.5
Peaxi162Scf00876g00220 Petunia axillaris HOM05D003734 ORTHO05D004270 5.1e-38 162.5 317 36.9
Oeu052711.1 Olea europaea HOM05D003734 ORTHO05D004270 8.7e-30 135.2 292 33.9
Oeu052712.1 Olea europaea HOM05D003734 ORTHO05D004270 8.7e-30 135.2 292 33.9
DCAR_007817 Daucus carota HOM05D003734 ORTHO05D004270 6.9e-27 125.6 176 43.2
Atru.chr1.1007 Acer truncatum HOM05D003734 ORTHO05D004270 1.7e-25 120.9 323 31.3
QL05p064513 Quercus lobata HOM05D003734 ORTHO05D004270 2.9e-25 120.2 307 32.2
TAR629G0335 Trochodendron aralioides HOM05D003734 ORTHO05D004270 6.4e-25 119.0 177 45.2
Actinidia29264 Actinidia chinensis HOM05D003734 ORTHO05D004270 4.2e-24 116.3 111 57.7
Haze_05937 Corylus avellana HOM05D003734 ORTHO05D004270 4.2e-24 116.3 159 42.8
Atru.chr1.975 Acer truncatum HOM05D003734 ORTHO05D004270 5.5e-24 115.9 313 31.0
TAR626G1440 Trochodendron aralioides HOM05D003734 ORTHO05D004270 7.1e-24 115.5 171 41.5
Cfa000774 Carpinus fangiana HOM05D003734 ORTHO05D004270 1.2e-23 114.8 162 42.0
Cc02_g35090 Coffea canephora HOM05D003734 ORTHO05D004270 2.7e-23 113.6 183 41.0
Rhsim13G0124800 Rhododendron simsii HOM05D003734 ORTHO05D004270 3.5e-23 113.2 178 52.8
Hma1.2p1_1671F.1_g296680 Hydrangea macrophylla HOM05D003734 ORTHO05D004270 7.9e-23 112.1 109 54.1
Potri.011G157700 Populus trichocarpa HOM05D003734 ORTHO05D004270 7.9e-23 112.1 179 41.9
Hma1.2p1_0078F.1_g040960 Hydrangea macrophylla HOM05D003734 ORTHO05D004270 2.3e-22 110.5 109 54.1
Medtr1g060700 Medicago truncatula HOM05D003734 ORTHO05D004270 2.3e-22 110.5 300 30.0
Actinidia33692 Actinidia chinensis HOM05D003734 ORTHO05D004270 3.9e-22 109.8 98 60.2
Thecc.06G011000 Theobroma cacao HOM05D003734 ORTHO05D004270 3.9e-22 109.8 184 37.5
GSVIVG01037927001 Vitis vinifera HOM05D003734 ORTHO05D004270 6.7e-22 109.0 176 39.8
Ciclev10017579m.g Citrus clementina HOM05D003734 ORTHO05D004270 8.7e-22 108.6 187 38.0
Sabra11G0142400 Salix brachista HOM05D003734 ORTHO05D004270 8.7e-22 108.6 176 40.9
Nitab4.5_0009906g0010 Nicotiana tabacum HOM05D003734 ORTHO05D004270 3.3e-21 106.7 177 39.0
COL.COLO4_22896 Corchorus olitorius HOM05D003734 ORTHO05D004270 9.6e-21 105.1 117 50.4
DCAR_003829 Daucus carota HOM05D003734 ORTHO05D004270 9.6e-21 105.1 154 42.2
MBI18_g40231_MAGBIO Magnolia biondii HOM05D003734 ORTHO05D004270 1.3e-20 104.8 100 57.0
MD05G1228800 Malus domestica HOM05D003734 ORTHO05D004270 1.3e-20 104.8 322 30.1
Nn2g11410 Nelumbo nucifera HOM05D003734 ORTHO05D004270 1.6e-20 104.4 105 52.4
Migut.H01308 Erythranthe guttata HOM05D003734 ORTHO05D004270 2.1e-20 104.0 95 54.7
FvH4_3g14980 Fragaria vesca HOM05D003734 ORTHO05D004270 2.1e-20 104.0 97 53.6
FAN11G2175 Fragaria x ananassa HOM05D003734 ORTHO05D004270 2.1e-20 104.0 97 53.6
FAN16G1905 Fragaria x ananassa HOM05D003734 ORTHO05D004270 2.1e-20 104.0 110 50.0
FAN25G0834 Fragaria x ananassa HOM05D003734 ORTHO05D004270 2.8e-20 103.6 91 57.1
Medtr2g067000 Medicago truncatula HOM05D003734 ORTHO05D004270 2.8e-20 103.6 300 35.0
Lalb_Chr03g0031841 Lupinus albus HOM05D003734 ORTHO05D004270 3.7e-20 103.2 110 50.0
MD05G1228100 Malus domestica HOM05D003734 ORTHO05D004270 4.8e-20 102.8 322 29.8
SalBow3G3793 Salvia bowleyana HOM05D003734 ORTHO05D004270 4.8e-20 102.8 88 61.4
Lsat_1_v5_gn_1_33401 Lactuca sativa HOM05D003734 ORTHO05D004270 6.2e-20 102.4 88 61.4
Manes.14G125900 Manihot esculenta HOM05D003734 ORTHO05D004270 6.2e-20 102.4 96 56.2
CiPaw.09G147300 Carya illinoinensis HOM05D003734 ORTHO05D004270 8.2e-20 102.1 192 35.9
SalBow3G4351 Salvia bowleyana HOM05D003734 ORTHO05D004270 8.2e-20 102.1 88 60.2
Glyma.15G260500 Glycine max HOM05D003734 ORTHO05D004270 1.1e-19 101.7 111 47.7
Potri.001G461000 Populus trichocarpa HOM05D003734 ORTHO05D004270 1.8e-19 100.9 319 31.0
COL.COLO4_32255 Corchorus olitorius HOM05D000859 ORTHO05D000668 2.4e-19 100.5 104 51.0
MBI18_g42709_MAGBIO Magnolia biondii HOM05D003734 ORTHO05D004270 3.1e-19 100.1 100 55.0
SGA_v2.0_scaffold51G18664 Striga asiatica HOM05D003734 ORTHO05D004270 3.1e-19 100.1 114 45.6
CiPaw.09G146600 Carya illinoinensis HOM05D003734 ORTHO05D004270 4.0e-19 99.8 192 35.4
Migut.M01923 Erythranthe guttata HOM05D003734 ORTHO05D004270 4.0e-19 99.8 101 51.5
MBI18_g40230_MAGBIO Magnolia biondii HOM05D003734 ORTHO05D004270 4.0e-19 99.8 100 54.0
Nn2g11408 Nelumbo nucifera HOM05D003734 ORTHO05D004270 4.0e-19 99.8 106 51.9
SGA_v2.0_scaffold1G00292 Striga asiatica HOM05D003734 ORTHO05D004270 4.0e-19 99.8 116 50.9
TPR.G33819 Trifolium pratense HOM05D003734 ORTHO05D004270 4.0e-19 99.8 111 47.7
Prupe.4G134200 Prunus persica HOM05D003734 ORTHO05D004270 5.3e-19 99.4 101 50.5
CDE03G0447 Ceratophyllum demersum HOM05D003734 ORTHO05D004270 6.9e-19 99.0 107 49.5
FAN21G0763 Fragaria x ananassa HOM05D003734 ORTHO05D004270 6.9e-19 99.0 87 57.5
arahy.Tifrunner.gnm1.ann1.GU0FP7 Arachis hypogaea HOM05D003734 ORTHO05D004270 9.0e-19 98.6 112 47.3
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 9.0e-19 98.6 112 46.4
CiPaw.09G146700 Carya illinoinensis HOM05D003734 ORTHO05D004270 1.2e-18 98.2 110 50.9
Gohir.A03G172700 Gossypium hirsutum HOM05D003734 ORTHO05D004270 1.2e-18 98.2 91 57.1
Gohir.D02G195900 Gossypium hirsutum HOM05D003734 ORTHO05D004270 1.2e-18 98.2 91 57.1
Gorai.005G218900 Gossypium raimondii HOM05D003734 ORTHO05D004270 1.2e-18 98.2 91 57.1
FAN16G0318 Fragaria x ananassa HOM05D003734 ORTHO05D004270 1.5e-18 97.8 105 48.6
FAN21G1749 Fragaria x ananassa HOM05D003734 ORTHO05D004270 1.5e-18 97.8 105 46.7
TPR.G26563 Trifolium pratense HOM05D003734 ORTHO05D004270 1.5e-18 97.8 111 46.8
Cfa022977 Carpinus fangiana HOM05D003734 ORTHO05D004270 2.0e-18 97.4 111 45.9
Lsat_1_v5_gn_1_33361 Lactuca sativa HOM05D003734 ORTHO05D004270 2.0e-18 97.4 87 56.3
arahy.Tifrunner.gnm1.ann1.CF90NA Arachis hypogaea HOM05D003734 ORTHO05D004270 2.6e-18 97.1 112 46.4
Ca_03590_v3 Cicer arietinum L. HOM05D003734 ORTHO05D004270 2.6e-18 97.1 112 50.0
RcHm_v2.0_Chr5g0018101 Rosa chinensis HOM05D003734 ORTHO05D004270 2.6e-18 97.1 105 45.7
FAN25G3016 Fragaria x ananassa HOM05D003734 ORTHO05D004270 3.4e-18 96.7 105 46.7
Glyma.08G167000 Glycine max HOM05D003734 ORTHO05D004270 3.4e-18 96.7 111 45.9
Ca_03592_v3 Cicer arietinum L. HOM05D003734 ORTHO05D004270 4.5e-18 96.3 112 49.1
Haze_07817 Corylus avellana HOM05D003734 ORTHO05D004270 4.5e-18 96.3 111 46.8
FvH4_3g11190 Fragaria vesca HOM05D003734 ORTHO05D004270 4.5e-18 96.3 105 45.7
arahy.Tifrunner.gnm1.ann1.DXD2XK Arachis hypogaea HOM05D003734 ORTHO05D004270 5.8e-18 95.9 336 29.5
CsaV3_1G037610 Cucumis sativus L. HOM05D003734 ORTHO05D004270 5.8e-18 95.9 96 53.1
Lj3g0017864 Lotus japonicus HOM05D003734 ORTHO05D004270 5.8e-18 95.9 114 47.4
Eucgr.D01630 Eucalyptus grandis HOM05D003734 ORTHO05D004270 7.6e-18 95.5 111 47.7
unitig_32.g10876 Utricularia gibba HOM05D003734 ORTHO05D004270 7.6e-18 95.5 94 54.3
QL04p088510 Quercus lobata HOM05D003734 ORTHO05D004270 1.0e-17 95.1 146 39.0
vmacro21872 Vaccinium macrocarpon HOM05D003734 ORTHO05D004270 1.0e-17 95.1 154 53.2
TWI32G1238 Tripterygium wilfordii HOM05D003734 ORTHO05D004270 1.7e-17 94.4 96 51.0
TWI34G1793 Tripterygium wilfordii HOM05D003734 ORTHO05D004270 1.7e-17 94.4 101 49.5
Manes.06G052000 Manihot esculenta HOM05D003734 ORTHO05D004270 2.2e-17 94.0 93 52.7
Prupe.4G100400 Prunus persica HOM05D003734 ORTHO05D004270 2.2e-17 94.0 101 46.5
VMungo0331G1116 Vigna mungo HOM05D003734 ORTHO05D004270 2.2e-17 94.0 110 49.1
CDE06G0170 Ceratophyllum demersum HOM05D003734 ORTHO05D004270 2.9e-17 93.6 97 50.5
Duzib213G0851 Durio zibethinus HOM05D003734 ORTHO05D004270 2.9e-17 93.6 84 57.1
Sabra16G0312500 Salix brachista HOM05D003734 ORTHO05D004270 2.9e-17 93.6 107 45.8
Thecc.07G180300 Theobroma cacao HOM05D003734 ORTHO05D004270 2.9e-17 93.6 83 56.6
Lj3g0011993 Lotus japonicus HOM05D003734 ORTHO05D004270 3.8e-17 93.2 112 44.6
unitig_748.g8277 Utricularia gibba HOM05D003734 ORTHO05D004270 3.8e-17 93.2 93 54.8
CDE07G1862 Ceratophyllum demersum HOM05D003734 ORTHO05D004270 4.9e-17 92.8 107 46.7
Nn2g13642 Nelumbo nucifera HOM05D003734 ORTHO05D004270 4.9e-17 92.8 111 46.8
QL04p088957 Quercus lobata HOM05D003734 ORTHO05D004270 4.9e-17 92.8 146 38.4
arahy.Tifrunner.gnm1.ann1.F6GRBT Arachis hypogaea HOM05D003734 ORTHO05D004270 6.5e-17 92.4 112 43.8
ClCG03G008540 Citrullus lanatus HOM05D003734 ORTHO05D004270 6.5e-17 92.4 98 50.0
Duzib187G1153 Durio zibethinus HOM05D003734 ORTHO05D004270 6.5e-17 92.4 83 55.4
Sed0014082 Sechium edule HOM05D003734 ORTHO05D004270 6.5e-17 92.4 99 50.5
Rhsim06G0137400 Rhododendron simsii HOM05D003734 ORTHO05D004270 8.4e-17 92.0 85 54.1
CARHR128980 Cardamine hirsuta HOM05D003734 ORTHO05D004270 1.1e-16 91.7 303 28.7
PGR004G2748 Punica granatum HOM05D003734 ORTHO05D004270 1.1e-16 91.7 106 47.2
PGR038G0002 Punica granatum HOM05D003734 ORTHO05D004270 1.1e-16 91.7 106 47.2
Cpa.g.sc489.6 Carica papaya HOM05D003734 ORTHO05D004270 1.9e-16 90.9 110 45.5
MD10G1243500 Malus domestica HOM05D003734 ORTHO05D004270 2.5e-16 90.5 220 30.9
ECA247G3319 Erigeron canadensis HOM05D003734 ORTHO05D004270 3.2e-16 90.1 92 48.9
PSO675G2780 Papaver somniferum HOM05D003734 ORTHO05D004270 3.2e-16 90.1 82 58.5
Phvul.001G006200 Phaseolus vulgaris HOM05D003734 ORTHO05D004270 3.2e-16 90.1 111 45.0
PSO357G0398 Papaver somniferum HOM05D003734 ORTHO05D004270 4.2e-16 89.7 95 50.5
PSO541G2074 Papaver somniferum HOM05D003734 ORTHO05D004270 4.2e-16 89.7 85 56.5
MD05G1265500 Malus domestica HOM05D003734 ORTHO05D004270 5.5e-16 89.4 109 44.0
Phvul.001G006100 Phaseolus vulgaris HOM05D003734 ORTHO05D004270 5.5e-16 89.4 110 44.5
Aqoxy2G02922 Aquilegia oxysepala HOM05D003734 ORTHO05D004270 7.1e-16 89.0 90 55.6
PSO541G1280 Papaver somniferum HOM05D003734 ORTHO05D004270 7.1e-16 89.0 93 52.7
MELO3C002870.2 Cucumis melo HOM05D003734 ORTHO05D004270 9.3e-16 88.6 105 49.5
ECA234G0609 Erigeron canadensis HOM05D003734 ORTHO05D004270 9.3e-16 88.6 92 48.9
Gohir.A01G097300 Gossypium hirsutum HOM05D003734 ORTHO05D004270 9.3e-16 88.6 83 55.4
Gohir.D01G081900 Gossypium hirsutum HOM05D003734 ORTHO05D004270 1.6e-15 87.8 83 55.4
Gorai.002G107000 Gossypium raimondii HOM05D003734 ORTHO05D004270 1.6e-15 87.8 83 55.4
Sc01g0008400 Simmondsia chinensis HOM05D003734 ORTHO05D004270 2.1e-15 87.4 101 49.5
CSS0008304 Camellia sinensis var. sinensis HOM05D003734 ORTHO05D004270 2.7e-15 87.0 247 32.0
CDE03G0187 Ceratophyllum demersum HOM05D003734 ORTHO05D004270 2.7e-15 87.0 80 56.2
PSO675G3350 Papaver somniferum HOM05D003734 ORTHO05D004270 3.5e-15 86.7 85 55.3
VMungo0647G2067 Vigna mungo HOM05D003734 ORTHO05D004270 4.6e-15 86.3 112 43.8
ATR0568G033 Amborella trichopoda HOM05D003734 ORTHO05D004270 7.9e-15 85.5 108 45.4
CANSAT64G1385 Cannabis sativa HOM05D003734 ORTHO05D004270 7.9e-15 85.5 91 50.5
Aa31LG10G6480 Aethionema arabicum HOM05D003734 ORTHO05D004270 1.0e-14 85.1 114 43.0
CSS0011269 Camellia sinensis var. sinensis HOM05D003734 ORTHO05D004270 1.0e-14 85.1 210 34.3
BolC4t22983H Brassica oleracea HOM05D003734 ORTHO05D004270 1.3e-14 84.7 111 43.2
Oeu000508.1 Olea europaea HOM05D003734 ORTHO05D004270 1.3e-14 84.7 94 52.1
MBI18_g46680_MAGBIO Magnolia biondii HOM05D003734 ORTHO05D004270 1.8e-14 84.3 80 58.8
Aqoxy7G03787 Aquilegia oxysepala HOM05D003734 ORTHO05D004270 2.3e-14 84.0 115 47.0
AL4G30800 Arabidopsis lyrata HOM05D003734 ORTHO05D004270 3.9e-14 83.2 307 27.0
A04p26590 Brassica napus HOM05D003734 ORTHO05D004270 3.9e-14 83.2 322 27.6
C04p64010 Brassica napus HOM05D003734 ORTHO05D004270 3.9e-14 83.2 322 27.6
Sp4g17100 Schrenkiella parvula HOM05D003734 ORTHO05D004270 3.9e-14 83.2 109 41.3
BcaC02g11564 Brassica carinata HOM05D003734 ORTHO05D004270 5.1e-14 82.8 111 42.3
CANSAT35G0546 Cannabis sativa HOM05D003734 ORTHO05D004270 8.7e-14 82.0 91 49.5
BolC4t27875H Brassica oleracea HOM05D003734 ORTHO05D004270 1.1e-13 81.6 306 28.4
BraA04t18164Z Brassica rapa HOM05D003734 ORTHO05D004270 1.1e-13 81.6 317 28.1
BcaC02g07757 Brassica carinata HOM05D003734 ORTHO05D004270 1.9e-13 80.9 95 46.3
A05p10840 Brassica napus HOM05D003734 ORTHO05D004270 1.9e-13 80.9 111 41.4
BraA05t20029Z Brassica rapa HOM05D003734 ORTHO05D004270 1.9e-13 80.9 111 41.4
C04p13940 Brassica napus HOM05D003734 ORTHO05D004270 2.5e-13 80.5 111 41.4
RcHm_v2.0_Chr5g0024601 Rosa chinensis HOM05D003734 ORTHO05D004270 3.3e-13 80.1 52 69.2
THA.LOC104814696 Tarenaya hassleriana HOM05D003734 ORTHO05D004270 4.3e-13 79.7 111 39.6
AT2G34820 Arabidopsis thaliana HOM05D003734 ORTHO05D004270 5.7e-13 79.3 317 27.1
BcaB02g09505 Brassica carinata HOM05D003734 ORTHO05D004270 9.7e-13 78.6 110 40.9
Thhalv10017751m.g Eutrema salsugineum HOM05D003734 ORTHO05D004270 1.3e-12 78.2 110 39.1
AT1G30670 Arabidopsis thaliana HOM05D003734 ORTHO05D004270 2.2e-12 77.4 111 38.7
Carub.0001s2893 Capsella rubella HOM05D003734 ORTHO05D004270 2.2e-12 77.4 92 43.5
ATR0680G317 Amborella trichopoda HOM05D003734 ORTHO05D004270 3.7e-12 76.6 101 44.6
BraA03t11188Z Brassica rapa HOM05D003734 ORTHO05D004270 6.3e-12 75.9 118 38.1
PGR083G1880 Punica granatum HOM05D003734 ORTHO05D004270 6.3e-12 75.9 101 42.6
Thhalv10009765m.g Eutrema salsugineum HOM05D003734 ORTHO05D004270 1.1e-11 75.1 111 37.8
CARHR030140 Cardamine hirsuta HOM05D003734 ORTHO05D004270 1.4e-11 74.7 111 37.8
BolC3t14654H Brassica oleracea HOM05D003734 ORTHO05D004270 1.8e-11 74.3 118 38.1
Dinv19591 Davidia involucrata HOM05D003734 ORTHO05D004270 1.8e-11 74.3 50 70.0
HanXRQChr02g0033271 Helianthus annuus HOM05D003734 ORTHO05D004270 2.4e-11 73.9 48 70.8
Ah.12g054160 Amaranthus hybridus HOM05D003734 ORTHO05D004270 4.1e-11 73.2 89 41.6
SHI24799 Sapria himalayana HOM05D003734 ORTHO05D004270 4.1e-11 73.2 81 49.4
BcaC01g05752 Brassica carinata HOM05D003734 ORTHO05D004270 5.3e-11 72.8 107 39.3
HPP92_007297 Vanilla planifolia HOM05D003734 ORTHO05D004270 6.9e-11 72.4 50 66.0
AL1G44730 Arabidopsis lyrata HOM05D003734 ORTHO05D004270 1.2e-10 71.6 291 25.4
Zm00001eb002350 Zea mays HOM05D003734 ORTHO05D004270 4.5e-10 69.7 96 40.6
Sp1g26570 Schrenkiella parvula HOM05D003734 ORTHO05D004270 1.0e-09 68.6 92 41.3
C03p22570 Brassica napus HOM05D003734 ORTHO05D004270 1.3e-09 68.2 139 32.4
THA.LOC104798622 Tarenaya hassleriana HOM05D003734 ORTHO05D004270 1.3e-09 68.2 95 40.0
Cpa.g.sc489.5 Carica papaya HOM05D003734 ORTHO05D004270 3.8e-09 66.6 48 62.5
EL10Ac5g12386 Beta vulgaris HOM05D003734 ORTHO05D004270 1.1e-08 65.1 51 56.9
A03p19320 Brassica napus HOM05D003734 ORTHO05D004270 1.1e-08 65.1 139 31.7
VMungo0331G1723 Vigna mungo HOM05D000037 ORTHO05D000608 2.7e-07 60.5 91 41.8
CDE05G1372 Ceratophyllum demersum HOM05D007657 ORTHO05D009471 2.3e-06 57.4 109 34.9
Mapoly0024s0106 Marchantia polymorpha HOM05D000850 ORTHO05D000266 3.9e-06 56.6 79 39.2
VMungo0331G1280 Vigna mungo HOM05D003734 ORTHO05D004270 6.7e-06 55.8 43 60.5


User provided reference genes

Program Settings