Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400044487 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.4e-116 422.2 211 100.0
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.1e-56 223.0 136 82.4
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 1.6e-51 206.8 136 75.0
PGSC0003DMG400042745 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.9e-49 199.9 134 74.6
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 3.3e-49 199.1 136 73.5
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 9.0e-47 191.0 175 61.1
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.4e-46 189.1 136 69.9
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 1.4e-44 183.7 136 69.9
PGSC0003DMG400037194 Solanum tuberosum HOM05D003027 ORTHO05D003455 4.2e-44 182.2 199 54.8
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.1e-43 179.9 136 68.4
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 7.4e-41 171.4 136 68.4
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 3.1e-39 166.0 138 62.3
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.0e-37 161.0 134 64.9
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 3.2e-36 156.0 134 64.2
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 9.4e-36 154.5 138 59.4
Sopen04g022330 Solanum pennellii HOM05D003027 ORTHO05D003455 1.0e-34 151.0 136 61.0
PGSC0003DMG400045500 Solanum tuberosum HOM05D003027 ORTHO05D003455 4.8e-32 142.1 170 51.8
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 4.1e-31 139.0 125 60.8
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 1.5e-30 137.1 138 55.1
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.0e-29 134.4 138 54.3
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 5.1e-26 122.1 90 70.0
PGSC0003DMG400039444 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.1e-23 114.4 81 70.4
PGSC0003DMG400039622 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.4e-23 114.0 91 65.9
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 1.7e-21 107.1 182 42.9
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.1e-20 104.4 155 45.8
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 3.2e-20 102.8 143 48.3
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 5.5e-20 102.1 151 43.0
PGSC0003DMG400042310 Solanum tuberosum HOM05D003027 ORTHO05D003455 5.5e-20 102.1 126 50.0
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 7.2e-20 101.7 132 52.3
Sopen03g010280 Solanum pennellii HOM05D003027 ORTHO05D003455 1.2e-19 100.9 125 51.2
PGSC0003DMG400034335 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.4e-18 97.4 67 71.6
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 2.3e-18 96.7 62 75.8
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 3.0e-18 96.3 171 39.2
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 3.0e-18 96.3 142 46.5
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 5.2e-18 95.5 178 39.9
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 5.2e-18 95.5 111 55.9
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 6.7e-18 95.1 152 40.8
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 6.7e-18 95.1 152 40.8
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.5e-17 94.0 194 38.1
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 2.6e-17 93.2 142 44.4
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 4.4e-17 92.4 108 50.9
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 5.7e-17 92.0 178 39.9
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 1.7e-16 90.5 118 49.2
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.7e-16 90.5 149 43.0
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 2.2e-16 90.1 114 51.8
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.8e-16 89.7 122 48.4
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 6.3e-16 88.6 92 53.3
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 6.3e-16 88.6 99 52.5
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 6.3e-16 88.6 99 52.5
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 8.2e-16 88.2 149 41.6
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 8.2e-16 88.2 149 40.3
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.1e-15 87.8 149 43.0
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 1.8e-15 87.0 109 46.8
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 3.1e-15 86.3 165 42.4
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 3.1e-15 86.3 148 41.2
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 4.1e-15 85.9 143 42.7
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 5.3e-15 85.5 187 38.5
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 9.1e-15 84.7 146 42.5
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 1.2e-14 84.3 146 43.2
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.2e-14 84.3 146 39.7
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.6e-14 84.0 135 40.7
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.6e-14 84.0 151 41.1
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 2.0e-14 83.6 170 41.2
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 2.6e-14 83.2 166 37.3
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 2.6e-14 83.2 147 40.8
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.6e-14 83.2 135 43.7
PGSC0003DMG400043705 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.6e-14 83.2 66 68.2
Hma1.2p1_0427F.1_g150690 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 3.5e-14 82.8 96 53.1
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 3.5e-14 82.8 105 46.7
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 4.5e-14 82.4 142 44.4
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 4.5e-14 82.4 148 41.2
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 5.9e-14 82.0 135 43.0
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 5.9e-14 82.0 152 37.5
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 5.9e-14 82.0 147 40.1
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 7.7e-14 81.6 152 37.5
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 7.7e-14 81.6 146 39.0
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 1.0e-13 81.3 107 46.7
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 1.0e-13 81.3 185 36.8
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 1.3e-13 80.9 137 43.8
PGSC0003DMG400044241 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.3e-13 80.9 48 81.2
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 2.2e-13 80.1 135 42.2
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 2.2e-13 80.1 162 39.5
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 2.9e-13 79.7 128 45.3
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 2.9e-13 79.7 136 40.4
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 2.9e-13 79.7 104 51.9
PGSC0003DMG400044442 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.8e-13 79.3 52 78.8
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 5.0e-13 79.0 149 42.3
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 5.0e-13 79.0 177 37.3
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 5.0e-13 79.0 185 36.8
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 6.5e-13 78.6 131 39.7
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 6.5e-13 78.6 149 40.3
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 8.5e-13 78.2 180 40.0
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.5e-12 77.4 147 38.8
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.9e-12 77.0 131 41.2
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.5e-12 76.6 131 42.0
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 2.5e-12 76.6 145 38.6
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 2.5e-12 76.6 128 43.0
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 3.2e-12 76.3 143 39.2
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 3.2e-12 76.3 100 48.0
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 4.2e-12 75.9 143 42.7
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 5.5e-12 75.5 105 48.6
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 9.4e-12 74.7 201 31.8
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 9.4e-12 74.7 133 39.1
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 9.4e-12 74.7 106 49.1
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 1.2e-11 74.3 147 40.8
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 2.1e-11 73.6 95 51.6
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 2.7e-11 73.2 177 37.3
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 3.6e-11 72.8 135 40.7
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 3.6e-11 72.8 185 39.5
TAR636G3275 Trochodendron aralioides HOM05D003027 ORTHO05D003455 4.7e-11 72.4 150 40.0
Nn7g36946 Nelumbo nucifera HOM05D003027 ORTHO05D003455 6.1e-11 72.0 106 48.1
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 8.0e-11 71.6 185 33.5
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 1.0e-10 71.2 98 44.9
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 1.0e-10 71.2 93 49.5
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 1.0e-10 71.2 158 38.6
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 1.4e-10 70.9 111 47.7
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 2.3e-10 70.1 143 39.9
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 3.0e-10 69.7 143 42.0
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 4.0e-10 69.3 84 52.4
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 5.2e-10 68.9 139 41.0
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 5.2e-10 68.9 132 39.4
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 6.8e-10 68.6 112 42.0
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 1.5e-09 67.4 94 48.9
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.0e-09 67.0 94 46.8
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 2.0e-09 67.0 140 36.4
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 2.6e-09 66.6 83 50.6
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 2.6e-09 66.6 128 42.2
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.6e-09 66.6 153 34.6
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 5.7e-09 65.5 93 44.1
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 5.7e-09 65.5 115 40.9
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 7.5e-09 65.1 93 46.2
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 7.5e-09 65.1 93 46.2
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 7.5e-09 65.1 141 40.4
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 9.8e-09 64.7 107 41.1
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 9.8e-09 64.7 107 41.1
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 9.8e-09 64.7 107 41.1
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 9.8e-09 64.7 191 34.6
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.8e-08 63.2 71 47.9
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 2.8e-08 63.2 124 38.7
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 3.7e-08 62.8 81 51.9
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.7e-08 62.8 103 40.8
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 6.3e-08 62.0 125 38.4
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 6.3e-08 62.0 92 44.6
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 6.3e-08 62.0 94 44.7
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 8.3e-08 61.6 96 44.8
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 8.3e-08 61.6 96 44.8
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 8.3e-08 61.6 111 38.7
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 1.1e-07 61.2 153 34.6
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.4e-07 60.8 167 32.9
Sc19g0007990 Simmondsia chinensis HOM05D003027 ORTHO05D003455 1.8e-07 60.5 125 42.4
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 3.1e-07 59.7 111 41.4
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 3.1e-07 59.7 145 35.9
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.1e-07 59.3 167 32.9
Sopen03g010290 Solanum pennellii HOM05D000004 ORTHO05D000034 4.1e-07 59.3 50 70.0
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.4e-07 58.9 167 32.9
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 7.0e-07 58.5 84 45.2
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 9.1e-07 58.2 124 36.3
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 1.2e-06 57.8 136 34.6


User provided reference genes

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