Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 2.2e-222 775.4 411 100.0
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 4.3e-202 708.0 409 93.2
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.5e-199 699.5 407 93.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.5e-186 655.6 412 88.1
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.9e-183 643.7 412 86.2
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.9e-182 642.1 412 85.9
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 9.3e-165 583.9 412 79.9
PGSC0003DMG400021645 Solanum tuberosum HOM05D002270 ORTHO05D002866 4.4e-122 442.2 233 99.1
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.6e-87 327.4 419 51.3
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 3.0e-86 323.2 417 49.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 6.4e-81 305.4 406 48.8
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 8.4e-81 305.1 344 51.2
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.0e-78 296.6 424 47.9
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.1e-77 294.7 424 46.7
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 4.0e-75 286.2 408 46.3
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 4.0e-75 286.2 406 46.8
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.7e-73 280.8 421 44.7
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 2.9e-73 280.0 426 44.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.4e-72 277.7 428 46.7
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.9e-72 277.3 424 45.5
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 9.3e-72 275.0 418 46.2
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.0e-70 271.6 420 44.8
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 6.2e-68 262.3 424 44.1
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.1e-67 261.5 424 44.1
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.4e-67 260.4 348 48.3
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 4.0e-67 259.6 423 44.7
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.2e-66 258.1 422 45.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.5e-66 257.7 409 43.0
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 3.4e-66 256.5 359 45.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.7e-65 254.2 324 48.5
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 2.2e-65 253.8 403 43.7
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.9e-65 252.7 441 42.4
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.9e-64 250.8 338 46.2
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 5.4e-64 249.2 422 41.2
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.1e-64 248.8 338 45.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.2e-63 248.1 419 41.3
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.6e-63 247.7 390 42.1
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.5e-63 246.5 417 41.7
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 1.0e-62 245.0 388 41.0
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.6e-62 242.3 391 43.5
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 8.7e-62 241.9 436 41.3
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 8.7e-62 241.9 409 39.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.1e-61 241.5 420 41.0
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 1.5e-61 241.1 422 43.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.9e-61 240.7 374 44.9
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.3e-61 239.6 410 42.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 5.6e-61 239.2 351 45.6
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 7.4e-61 238.8 391 43.2
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 2.8e-60 236.9 425 42.4
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.8e-60 236.9 388 42.8
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.4e-59 234.6 411 40.9
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.8e-59 234.2 401 41.6
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.1e-59 233.4 399 43.1
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 9.0e-59 231.9 375 42.1
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 9.0e-59 231.9 398 41.5
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.6e-58 230.3 432 41.0
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 5.8e-58 229.2 421 41.8
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 1.3e-57 228.0 353 42.8
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.9e-57 226.9 421 41.6
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 6.4e-57 225.7 416 41.6
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 2.1e-55 220.7 420 39.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.0e-54 218.4 260 51.9
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.3e-54 218.0 323 43.0
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 8.7e-54 215.3 409 38.6
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.7e-52 209.9 323 42.7
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.7e-52 209.9 333 42.3
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 3.1e-51 206.8 398 40.7
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.5e-50 204.5 301 43.5
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 4.5e-50 203.0 404 39.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.8e-49 199.9 408 39.2
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 3.2e-48 196.8 349 41.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.6e-47 194.5 322 41.3
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.8e-46 191.0 416 38.0
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.3e-46 190.7 422 38.4
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.0e-46 190.3 412 38.8
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.0e-46 190.3 418 37.3
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 5.1e-46 189.5 398 38.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.5e-45 188.0 419 37.9
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 2.9e-41 173.7 421 37.1
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 8.4e-41 172.2 419 35.3
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 9.3e-40 168.7 422 37.9
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.8e-38 164.5 426 34.5
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.9e-37 161.0 400 34.5
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.5e-37 160.6 426 33.6
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.6e-36 157.9 377 35.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.6e-36 157.9 384 33.9
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.2e-36 155.6 435 32.0
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.8e-35 154.5 364 35.7
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.4e-35 154.1 402 34.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.4e-35 154.1 376 34.8
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 9.0e-35 152.1 365 35.1
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.6e-34 150.6 404 33.7
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.4e-34 150.2 396 33.3
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.9e-34 149.4 404 33.4
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 9.4e-32 142.1 412 32.8
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.1e-31 141.0 318 37.7
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 8.8e-30 135.6 226 38.5
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.5e-29 134.0 101 68.3
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 3.3e-29 133.7 118 65.3
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 5.7e-29 132.9 418 34.0
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 2.2e-28 131.0 329 34.0
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 2.2e-28 131.0 287 38.7
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.3e-27 126.3 311 34.4
PSO210G4815 Papaver somniferum HOM05D002270 ORTHO05D002866 4.5e-26 123.2 217 39.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.2e-25 120.9 423 31.7
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.4e-24 118.2 431 32.3
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.2e-24 116.7 412 31.3
Aqoxy6G02933 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.1e-23 114.4 188 41.0
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 6.1e-23 112.8 413 31.5
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.1e-23 112.8 444 30.6
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 7.9e-23 112.5 182 43.4
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.0e-21 107.8 450 28.9
TPR.G582 Trifolium pratense HOM05D002270 ORTHO05D002866 9.7e-21 105.5 147 44.9
Aqoxy6G02932 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.8e-19 101.3 79 70.9
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.8e-19 101.3 81 69.1
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 5.9e-18 96.3 78 67.9
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 1.3e-17 95.1 394 28.7
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 9.4e-16 89.0 324 27.8
SMO141G0258 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 9.7e-13 79.0 52 71.2
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 2.2e-12 77.8 54 75.9
TPR.G10921 Trifolium pratense HOM05D002270 ORTHO05D002866 1.4e-11 75.1 249 31.7
BcaB03g13736 Brassica carinata HOM05D002270 ORTHO05D002866 3.5e-10 70.5 98 39.8
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 4.2e-08 63.5 54 63.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.6e-07 61.6 43 67.4
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 2.1e-07 61.2 36 75.0


User provided reference genes

Program Settings