Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400043350 Solanum tuberosum HOM05D003027 ORTHO05D003455 4.8e-58 227.6 116 100.0
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 5.9e-24 114.4 82 76.8
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.3e-23 113.2 82 74.4
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 3.0e-20 102.1 82 67.1
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 5.2e-20 101.3 82 67.1
Solyc04g056470.1 Solanum lycopersicum HOM05D003027 ORTHO05D003455 3.4e-19 98.6 70 77.1
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.7e-18 96.3 80 66.2
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.2e-18 95.9 82 63.4
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 6.3e-18 94.4 84 63.1
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 4.1e-17 91.7 80 63.8
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.1e-13 79.3 82 61.0
Solyc03g013450.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.0e-12 77.0 76 61.8
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.4e-12 76.6 82 57.3
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.8e-12 76.3 85 54.1
Sopen04g022330 Solanum pennellii HOM05D003027 ORTHO05D003455 5.2e-12 74.7 69 65.2
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 5.2e-12 74.7 82 57.3
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 6.8e-12 74.3 84 52.4
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.2e-11 73.6 78 53.8
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.2e-10 69.3 75 53.3
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 6.3e-10 67.8 101 44.6
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 1.1e-09 67.0 79 51.9
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 1.8e-09 66.2 72 47.2
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.4e-09 65.9 77 50.6
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 2.4e-09 65.9 83 45.8
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 3.1e-09 65.5 83 50.6
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 3.1e-09 65.5 76 53.9
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 4.1e-09 65.1 74 48.6
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 5.4e-09 64.7 79 49.4
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 5.4e-09 64.7 76 50.0
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 7.0e-09 64.3 76 52.6
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 7.0e-09 64.3 76 52.6
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 9.1e-09 63.9 73 53.4
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 1.2e-08 63.5 80 46.2
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 1.2e-08 63.5 75 48.0
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.6e-08 63.2 78 48.7
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 1.6e-08 63.2 72 52.8
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 1.6e-08 63.2 73 49.3
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 1.6e-08 63.2 74 47.3
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 2.0e-08 62.8 80 45.0
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 2.7e-08 62.4 78 46.2
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 3.5e-08 62.0 85 43.5
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 3.5e-08 62.0 75 49.3
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 4.5e-08 61.6 78 48.7
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 4.5e-08 61.6 78 43.6
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 5.9e-08 61.2 77 49.4
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 5.9e-08 61.2 77 49.4
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 5.9e-08 61.2 78 46.2
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 5.9e-08 61.2 76 42.1
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 7.7e-08 60.8 91 42.9
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 1.0e-07 60.5 73 52.1
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 1.3e-07 60.1 80 46.2
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 1.3e-07 60.1 78 46.2
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.3e-07 60.1 74 43.2
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.7e-07 59.7 75 49.3
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 1.7e-07 59.7 78 47.4
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 1.7e-07 59.7 77 48.1
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.9e-07 58.9 69 55.1
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.8e-07 58.5 73 46.6
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 3.8e-07 58.5 74 48.6
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 3.8e-07 58.5 78 43.6
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 3.8e-07 58.5 79 41.8
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 5.0e-07 58.2 73 50.7
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 1.1e-06 57.0 73 43.8
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 1.1e-06 57.0 105 39.0
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 1.1e-06 57.0 76 47.4
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 1.5e-06 56.6 79 41.8
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.9e-06 56.2 73 46.6
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 1.9e-06 56.2 80 41.2
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.5e-06 55.8 75 45.3
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 2.5e-06 55.8 78 43.6
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 2.5e-06 55.8 71 52.1
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 4.2e-06 55.1 73 46.6
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 4.2e-06 55.1 73 46.6
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 4.2e-06 55.1 78 42.3
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 4.2e-06 55.1 78 42.3
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 4.2e-06 55.1 75 45.3
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 4.2e-06 55.1 69 52.2
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 5.5e-06 54.7 71 52.1
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.5e-06 54.7 70 42.9
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 7.2e-06 54.3 76 44.7
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 7.2e-06 54.3 78 43.6
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 7.2e-06 54.3 71 42.3
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 7.2e-06 54.3 71 42.3
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 7.2e-06 54.3 71 42.3
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 7.2e-06 54.3 74 45.9
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 9.5e-06 53.9 84 40.5
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 9.5e-06 53.9 72 43.1


User provided reference genes

Program Settings